SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G29350 | AT | Annotation by Michelle Graham. TAIR10: senescence-associated gene 13 | chr2:12601036-12602222 FORWARD LENGTH=269 | SoyBase | E_val: 3.00E-117 | ISS |
| GO:0002213 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to insect | SoyBase | N/A | ISS |
| GO:0007568 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aging | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0004022 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: alcohol dehydrogenase (NAD) activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| KOG0725 | KOG | Reductases with broad range of substrate specificities | JGI | ISS | |
| PTHR24310 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24310:SF66 | Panther | JGI | ISS | ||
| PF00106 | PFAM | short chain dehydrogenase | JGI | ISS | |
| UniRef100_B9S3D8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Tropinone reductase, putative n=1 Tax=Ricinus communis RepID=B9S3D8_RICCO | SoyBase | E_val: 2.00E-129 | ISS |
| UniRef100_C6TBU9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TBU9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g06310 not represented in the dataset |
Glyma12g06310 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g059200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g06310.1 sequence type=CDS gene model=Glyma12g06310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGCTGAGGCAAATTTTGATAGCAAAAGCAGCAGGTGGTCTTTGCAGGGGATGACAGCTCTCGTTACCGGTGGTTCCAAAGGAATCGGATATGCTATCGTGGAGGAGTTGGCACAACTTGGAGCCACTGTACACACTTGCGCTCGCAACGAAGCTGAACTCAATAAATCCTTAAATGAATGGAACACAAAAGGATACAGAGTAACTGGTTCGGTCCGTGACGTGGCGTCTCGTGCAGAAAGACAAGACCTCATAGCTAGAGTCTCAAATGAGTTTAATGGCAAACTCAATATCCTTGTAAACAATGTGGGAACAAACATACAGAAAGAGACCCTGGATTTCACAGAGGAAGATTTCACATTTCTGGTGAATACGAATCTTGAATCTTGTTTCCACCTAAGCCAGCTTGCACATCCTCTCCTAAAAGCTTCAGAAGCTGCAAACATCATTCTCATATCCTCCATTGCTGGTGTGGTAGCTTCAAATATAGTATCCGTTGTGTATGGTGCAACAAAAGGAGCAATGAACCAAATGACAAAACATTTGGCATGTGAATGGGCCAAAGACAATATAAGGACTAATTGCGTTGCACCAGGGCCAATTAGAACCCCTCTTGGTGACAAGCACTTTAAAGAGGAAAAACTTAATAATAGTCTGATTGCGCGAACCCCTCTTGGACGGATTGGAGAGGCAGAGGAGGTTTCTTCGTTGGTGGCATTCCTCTGCTTACCTGCAGCATCTTACATAACAGGACAAACCATTTGTGTTGATGGCGGCTTCACCGTGAACGGTCTCTACATAAGCTAG
>Glyma12g06310.1 sequence type=predicted peptide gene model=Glyma12g06310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAEANFDSKSSRWSLQGMTALVTGGSKGIGYAIVEELAQLGATVHTCARNEAELNKSLNEWNTKGYRVTGSVRDVASRAERQDLIARVSNEFNGKLNILVNNVGTNIQKETLDFTEEDFTFLVNTNLESCFHLSQLAHPLLKASEAANIILISSIAGVVASNIVSVVYGATKGAMNQMTKHLACEWAKDNIRTNCVAPGPIRTPLGDKHFKEEKLNNSLIARTPLGRIGEAEEVSSLVAFLCLPAASYITGQTICVDGGFTVNGLYIS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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