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Report for Sequence Feature Glyma12g06231

Feature Type:gene_model
Chromosome:Gm12
Start:4243413
stop:4246646
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g06231
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G59050AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:23839494-23842519 REVERSE LENGTH=312 SoyBaseE_val: 3.00E-10ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1LJX1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LJX1_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q2HS22UniRef Annotation by Michelle Graham. Most informative UniRef hit: IMP dehydrogenase/GMP reductase, putative n=1 Tax=Medicago truncatula RepID=Q2HS22_MEDTR SoyBaseE_val: 7.00E-39ISS

Expression Patterns of Glyma12g06231
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g06231 not represented in the dataset
Glyma12g06231 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g06231
ParalogEvidenceComments
Glyma11g14300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g06231 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g058400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g06231
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g06231
>Glyma12g06231.1   sequence type=CDS   gene model=Glyma12g06231   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTATTAACTCATCGATACCTTTTCAGCATCAGTTCCTCCATGACGAACGGGGCGAACATATTCTTCCACCAATACCAATACCATCACGTGACCCCAATCACACCAACTGCAACAACAACAACAACAACATTAGCGGACATGATTTAAAGCCACCGGAGCTGCTCATTCCCGTCCCAAATATGCCTCACTTCATGCCTCAAGACAACACCAAATTCGATTCCTCAAGCATTGGTTCTGACCATCTGGAATCGCTATGGGATTCAGTTAGTTCGCCCCAGTCAACGCTCTCGTCAACTTTGATCTCAATTCAGGGTAGTTCTGAAGATTCTTCTCAGGAACCATCGCCTAATAGCTATGACTTTTGTTGGAACAGCACCTACGATGTGGTGGAGATGTTAGAGAAGATGAAGCTTGACGAAAGGGACAGTTCCAAATACAATCCTGGTTATGGGAATCACAGGTTGGAGATCTCAAACGTTGGAGCCTGCTCTCTCCTTCATGAACAAATTCAAGCAATTCAATTGTCTCGGGTCAGGCAAGAGCAGATTCTGTCTGAGAAGCATAAACTAACTGCATACAGAGGAAAAAATCATGGGCAGATATCACAGCAATTTCAGAAGAAAGTTAAAGGGATTGATGATGGGTGTGATAAAGGATGGAGGACTCGTCCACCGTGGCACAATCGTTCACACCAGCAAGCTGGTTCAAGAGGCAAGTCTTGTGGAACTGGTGTTTTCTTGCCATGTGGCAGAACAAGTGCACCGTTGGAGTCACGTAAGAGACCAGATAAAGGATGCTCCACAGTTCTTATACCAGCTAGAGTAGTACAGGCTTTGCAACTCCACTTTGAGCAAATGGCTGCCACGTCTGGGCCCAAACCTGGTGGCTTCCCTCCCCTACATGATGTTTTAGTGAGTAACAGGGATGGCATGTATTCATTACAAAAGCGCCAATCACGCTACAAACCGGCACATATCCAGAATGAGATGATTCTGCCTCAAGAATGGACCTATTGA
Predicted protein sequences of Glyma12g06231
>Glyma12g06231.1   sequence type=predicted peptide   gene model=Glyma12g06231   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAINSSIPFQHQFLHDERGEHILPPIPIPSRDPNHTNCNNNNNNISGHDLKPPELLIPVPNMPHFMPQDNTKFDSSSIGSDHLESLWDSVSSPQSTLSSTLISIQGSSEDSSQEPSPNSYDFCWNSTYDVVEMLEKMKLDERDSSKYNPGYGNHRLEISNVGACSLLHEQIQAIQLSRVRQEQILSEKHKLTAYRGKNHGQISQQFQKKVKGIDDGCDKGWRTRPPWHNRSHQQAGSRGKSCGTGVFLPCGRTSAPLESRKRPDKGCSTVLIPARVVQALQLHFEQMAATSGPKPGGFPPLHDVLVSNRDGMYSLQKRQSRYKPAHIQNEMILPQEWTY*






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