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Report for Sequence Feature Glyma12g06190

Feature Type:gene_model
Chromosome:Gm12
Start:4219309
stop:4223089
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g06190
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G12860AT Annotation by Michelle Graham. TAIR10: dicarboxylate transporter 1 | chr5:4059927-4061919 REVERSE LENGTH=557 SoyBaseE_val: 0ISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0006833GO-bp Annotation by Michelle Graham. GO Biological Process: water transport SoyBaseN/AISS
GO:0009624GO-bp Annotation by Michelle Graham. GO Biological Process: response to nematode SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009750GO-bp Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus SoyBaseN/AISS
GO:0009832GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis SoyBaseN/AISS
GO:0015729GO-bp Annotation by Michelle Graham. GO Biological Process: oxaloacetate transport SoyBaseN/AISS
GO:0015742GO-bp Annotation by Michelle Graham. GO Biological Process: alpha-ketoglutarate transport SoyBaseN/AISS
GO:0015743GO-bp Annotation by Michelle Graham. GO Biological Process: malate transport SoyBaseN/AISS
GO:0016049GO-bp Annotation by Michelle Graham. GO Biological Process: cell growth SoyBaseN/AISS
GO:0016126GO-bp Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process SoyBaseN/AISS
GO:0019676GO-bp Annotation by Michelle Graham. GO Biological Process: ammonia assimilation cycle SoyBaseN/AISS
GO:0030243GO-bp Annotation by Michelle Graham. GO Biological Process: cellulose metabolic process SoyBaseN/AISS
GO:0071423GO-bp Annotation by Michelle Graham. GO Biological Process: malate transmembrane transport SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009534GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0015131GO-mf Annotation by Michelle Graham. GO Molecular Function: oxaloacetate transmembrane transporter activity SoyBaseN/AISS
GO:0015139GO-mf Annotation by Michelle Graham. GO Molecular Function: alpha-ketoglutarate transmembrane transporter activity SoyBaseN/AISS
GO:0015140GO-mf Annotation by Michelle Graham. GO Molecular Function: malate transmembrane transporter activity SoyBaseN/AISS
GO:0015367GO-mf Annotation by Michelle Graham. GO Molecular Function: oxoglutarate:malate antiporter activity SoyBaseN/AISS
PTHR10283Panther CATION TRANSPORTER RELATED JGI ISS
PTHR10283:SF13Panther gb def: conserved hypothetical protein [thermotoga maritima] JGI ISS
PF00939PFAM Sodium:sulfate symporter transmembrane region JGI ISS
UniRef100_B9RID8UniRef Annotation by Michelle Graham. Most informative UniRef hit: 2-oxoglutarate/malate translocator, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9RID8_RICCO SoyBaseE_val: 0ISS
UniRef100_I1LQJ9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LQJ9_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma12g06190
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g06190
ParalogEvidenceComments
Glyma11g14210 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g06190 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g058000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g06190
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g06190
>Glyma12g06190.1   sequence type=CDS   gene model=Glyma12g06190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCCGTTGCACTCACCACCACCGCCCTCCCCTCCCTCCGTCTCCGCCGCAACACCACCGCCACACTCAAACCAAACCGCCACGCTTCCATTTCACTCAAACCAAACCTCCACGCTTCAATCTCCTCCTTCCCAAATTTCTCACTCAAAAAACCACACCTAATTTCCACTCGCAAACCCTCCGCTTTAACAGTCAGAGCCTCCGCTGCCTCCATCACCCCGGCGCCGGCTCCGGTACAGCCATGGCAAGGCGCTGCCATAAAACCGCTAATAGCCTCCATCGCGACGGGAGTAATCCTCTGGTTCTCACCGGTTCCCGCCGGCGTGAACCGCAACGCGTGGCAACTACTCGCGATTTTCCTAGGCACAATCGTCGGCATTATAACGCAACCCTTGCCTCTTGGCGCGGTAGCAATATTAGGGTTAGGTGTTTCCGTTCTCACCAAAACCCTACCCTTCGCCGCCGCATTCTCCGGCTTCGGCGATCCCATCCCCTGGCTCATCGCCCTCGCCTTCTTCTTCGCCAAGGGTTTCATCAAAACCGGCCTCGGAAACCGCGTCGCGTACCAATTCGTTAAGCTCTTCGGTAGCTCCTCGCTAGGGTTAGGTTACAGCTTGGTCTTCAGCGAGGCGCTTCTTGCGCCGGCGATTCCCTCGGTGTCGGCGAGGGCGGGGGGGATTTTCCTACCGCTGGTGAAGGCGCTGTGCGTGGCTTGCGGGAGCAACGCCGGCGACGGGACAGAGCACAGGTTGGGGGCGTGGCTCATGCTCACGTGCTTTCAGACCTCCGTGATTACGTCGGCGATGTTCTTGACGGCGATGGCAGCGAATCCGCTGTGCGCGACTCTGACGCAGAATTCCATTAACCAGACGATTGGGTGGTTGGATTGGGCTAAAGCCGCAATTGTGCCTGGCTTGGCGTCGTTGGTGTTGGTGCCGTTGATTTTGTATGTTATATATCCGCCGACACTGAAGAGTAGTCCTGATGCTCCTAAGCTTGCGAAGGAGAAGTTGGAGAAGATGGGGCCCATGACGACCAATGAGAAGATCATGACTGCCACTCTGTTTCTCACGGTGGGACTTTGGGTATTTGGAGGACTTCTTAACATTGATGCTGTATCTGCTGCAATTCTTGGATTATCTGTACTTCTTGTCACTGGGGTTGTAACATGGAAGGAGTGCTTAGCTGAAGGAGTTGCTTGGGATACCCTCACATGGTTTGCTGCCCTCATAGCAATGGCTGGCTACCTGAACAAATATGGTCTCATTTCTTGGTTCAGTCAAACTGTTGTCAAGTTTGTCGGTGGATTGGGTCTATCATGGCAATTATCTTTTGGAATTCTAGTCCTTCTATACTTTTACTCTCATTACTTCTTTGCGAGTGGAGCTGCTCATATTGGTGCCATGTTTACTGCATTTTTGTCTGTGGCCACTGCTCTGGGGACTCCGCCATTCTTTGGAGCCATAGTGCTGTCCTTCCTCTCCAACCTTATGGGTGGCCTTACTCATTATGGAATTGGATCAGCTCCTGTGTTTTTCGGTGCCAACTATGTTCCCCTTGCTAAATGGTGGGGCTATGGATTCCTCATTAGTATTGTTAACATTATAATCTGGCTAGGACTAGGAGGAGTTTGGTGGAAATTCATTGGCTTGTGGTAA
Predicted protein sequences of Glyma12g06190
>Glyma12g06190.1   sequence type=predicted peptide   gene model=Glyma12g06190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASVALTTTALPSLRLRRNTTATLKPNRHASISLKPNLHASISSFPNFSLKKPHLISTRKPSALTVRASAASITPAPAPVQPWQGAAIKPLIASIATGVILWFSPVPAGVNRNAWQLLAIFLGTIVGIITQPLPLGAVAILGLGVSVLTKTLPFAAAFSGFGDPIPWLIALAFFFAKGFIKTGLGNRVAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPLVKALCVACGSNAGDGTEHRLGAWLMLTCFQTSVITSAMFLTAMAANPLCATLTQNSINQTIGWLDWAKAAIVPGLASLVLVPLILYVIYPPTLKSSPDAPKLAKEKLEKMGPMTTNEKIMTATLFLTVGLWVFGGLLNIDAVSAAILGLSVLLVTGVVTWKECLAEGVAWDTLTWFAALIAMAGYLNKYGLISWFSQTVVKFVGGLGLSWQLSFGILVLLYFYSHYFFASGAAHIGAMFTAFLSVATALGTPPFFGAIVLSFLSNLMGGLTHYGIGSAPVFFGANYVPLAKWWGYGFLISIVNIIIWLGLGGVWWKFIGLW*






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