SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G08500 | AT | Annotation by Michelle Graham. TAIR10: myb domain protein 83 | chr3:2576958-2578072 REVERSE LENGTH=343 | SoyBase | E_val: 2.00E-72 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:2000652 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of secondary cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| KOG0048 | KOG | Transcription factor, Myb superfamily | JGI | ISS | |
| PTHR10641 | Panther | MYB-RELATED | JGI | ISS | |
| PF00249 | PFAM | Myb-like DNA-binding domain | JGI | ISS | |
| UniRef100_G7IS01 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: MYB transcription factor n=1 Tax=Medicago truncatula RepID=G7IS01_MEDTR | SoyBase | E_val: 2.00E-115 | ISS |
| UniRef100_UPI00018C6C37 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00018C6C37 related cluster n=1 Tax=unknown RepID=UPI00018C6C37 | SoyBase | E_val: 0 | ISS |
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Glyma12g06180 not represented in the dataset |
Glyma12g06180 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g14200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g057900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g06180.2 sequence type=CDS gene model=Glyma12g06180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGGAAGCCCGAGGTTTCTGGAAACAACAACAACAACAACAACATTAATAACAAGCTTAGAAAAGGGTTGTGGTCACCTGAAGAAGATGACAAGCTCATGAACTACATGCTAAACAGTGGACAAGGTTGTTGGAGCGATGTAGCCAGAAATGCTGGCCTTCAAAGGTGTGGCAAAAGTTGTCGCCTTCGATGGATCAACTACTTGAGGCCTGATCTTAAACGAGGTGCATTCTCACAACAAGAAGAGGAACTCATCATCCACTTGCATTCCCTTCTCGGAAACAGATGGTCTCAAATAGCGGCGCGCTTACCAGGGAGAACAGACAATGAAATTAAGAATTTTTGGAATTCAACAATAAAGAAAAGACTCAAGAACATGTCATCCAACACCTCACCAAATGGAAGCGAGTCCTCATATGAGCCTAATAACAGAGACCTTAACATGGCAGGGTTTACTACTTCTAATACCCAAGATCAACAACATGCTGATTTTATGCCTATGTTCAATTCATCATCTCAATCACCCTCCATGCATGCCATGGTTCTCAATTCCATAATTGACAGGTTGCCTATGCTAGAGCATGGACTAAACATGCCATGTTCTGGTGGATTCTTCAATAGCACAGGGCCATGCTTCTCATCATCACAAAGTGGAGTTGACAACAAAGGGATTTATTTGGAAAATGGAGGAGTATTTGGGAGTGTAAATATTGGTGCAGAAGGGGATGTGTATGTTCCCCCTCTAGAGAGTGTTAGCACTACTTCTGACCATAACCTGAAAGTGGAGAGCACATGCAACACAGATACTAACAATAGTTACTTTGATGACATAAACAGTATCCTCCTTAATAATTGCAACATTAATAGCAACAATAAGAGAGCTGAAAATAGGGCTGGTGGGGTGGAGAATTTGTTTCAGGAAGAGTTAACCATTGGAGAGTGGGACTTGGAGGAGTTAATGAAAGATGTTTCATCCTTTCCCTTTCTTGATTTTTCAAATATCCAATAA
>Glyma12g06180.2 sequence type=predicted peptide gene model=Glyma12g06180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRKPEVSGNNNNNNNINNKLRKGLWSPEEDDKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSSNTSPNGSESSYEPNNRDLNMAGFTTSNTQDQQHADFMPMFNSSSQSPSMHAMVLNSIIDRLPMLEHGLNMPCSGGFFNSTGPCFSSSQSGVDNKGIYLENGGVFGSVNIGAEGDVYVPPLESVSTTSDHNLKVESTCNTDTNNSYFDDINSILLNNCNINSNNKRAENRAGGVENLFQEELTIGEWDLEELMKDVSSFPFLDFSNIQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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