Report for Sequence Feature Glyma12g06170
Feature Type: gene_model
Chromosome: Gm12
Start: 4196901
stop: 4199004
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma12g06170
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G50920 AT
Annotation by Michelle Graham. TAIR10: Nucleolar GTP-binding protein | chr1:18870555-18872570 FORWARD LENGTH=671
SoyBase E_val: 0 ISS
GO:0001510 GO-bp
Annotation by Michelle Graham. GO Biological Process: RNA methylation
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
GO:0005525 GO-mf
Annotation by Michelle Graham. GO Molecular Function: GTP binding
SoyBase N/A ISS
KOG1490
KOG
GTP-binding protein CRFG/NOG1 (ODN superfamily)
JGI ISS
PTHR11702 Panther
DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED
JGI ISS
PTHR11702:SF4 Panther
GTP-BINDING PROTEIN YLF2-RELATED
JGI ISS
PF06858 PFAM
Nucleolar GTP-binding protein 1 (NOG1)
JGI ISS
PF08155 PFAM
NOGCT (NUC087) domain
JGI ISS
UniRef100_I1LJW2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Nucleolar GTP-binding protein 1 n=1 Tax=Glycine max RepID=I1LJW2_SOYBN
SoyBase E_val: 0 ISS
UniRef100_I1LJW2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Nucleolar GTP-binding protein 1 n=1 Tax=Glycine max RepID=I1LJW2_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma12g06170
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma12g06170
Paralog Evidence Comments
Glyma11g14190 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma12g06170 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.12g057800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma12g06170
Coding sequences of Glyma12g06170
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g06170.1 sequence type=CDS gene model=Glyma12g06170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTTCAGTATAATTTTAAGAAGATCACTGTGGTGCCAAATGGGAAGGATGTCGTCGACATCATCCTCTCTCGCACCCAGCGTCAGACACCAACCGTTGTGCACAAAGGATATGCTATTTCACGGCTTCGCCAATTCTACATGCGCAAAGTGAAGTATACTCAGCAGAATTTTCATGACAAGCTCTCCACAATAATCGACGAGTTCCCCAGGCTCGACGATATTCATCCTTTCTATGGCGATCTCCTCCATGTGCTCTACAATAAGGACCACTACAAGCTTGCTCTTGGCCAAATTAACACTGCCAGGAATCTCATTGGTAAGATTGCCAAAGACTATGTGAAGTTGTTGAAGTATGGTGACTCGCTGTATCGGTGCAAGTGTCTTAAGGTGGCTGCTCTTGGCCGCATGTGCACTGTGATCAAGAGGGTTGGCCCGAGTTTGGCTTATCTAGAACAGGTCAGACAGCACATGGCTAGGCTTCCCTCTATTGATCCAAATACGAGGACTATCTTGATCTGTGGATATCCCAATGTTGGCAAGAGCTCGTTCATTAACAAGATTACTAGAGCTGATGTGGATGTGCAGCCCTATGCTTTCACTACAAAGTCTCTCTTTGTGGGTCATACTGATTATAAATACCTGAGGTACCAAGTAATTGATACACCAGGGATTTTGGACAGGCCTTTTGAAGATCGTAATATTATTGAGATGTGCAGTATCACTGCTCTAGCACATTTGAGAGCCGCGATATTGTTTTTCTTGGACGTGTCTGGGTCTTGTGGTTACAGTATTGCTCAGCAGGCAGCTCTGTTTCACAGCATCAAGTCTTTGTTTATGAACAAGCCGTTGATTATAGTCTGCAACAAGACTGACTTGCAGCCACTTGAGGGGATATCTGAGGAAGACATGAAGTTGACTCTAGTTGGTCAAGGTGGTGAGCCTACAGACAATAACAGTGTATTGTTGACCATGAGCACTTTGACAGAAGAAGGGGTAATTGCTGTGAAAAATGCAGCATGTGAGAGGTTTCATGTTGCAGTACCAAAGCCTCGTGACCAGAAGGAAAGGCCTCCATGTATTCCTCAAGCAGTTTTAGAAGCTAAAGCTAAGCAAGCAGCTGAGAAGGAAAAGAGAAAAACTGAAAAGGATCTGGAGGATGAGAATGGTGGGGCGGGTGTATACTCAATGAACTTGAGAAAGAATTACATTTTGGCCGATGATGAATGGAAAGAGGATGTGCTGCCAGAAATTTTGGATGGACACAATGTGTATGATTTCATTGATCCTGATATTCTGCATAGGGTTGAAGAGTTGGAAAGAGAAGAAGGGATGAGACAGGAAGAAGCTGAGGATGGTGATTTTGAGATTGATGGAACTGAATTGACGCCCGAGCAGCAAGCAGCTTTAGCTGAGATTAGGAAAAAGAAAAGCTTGCTCATCCAGCAGCATAGGATCAAAAAGAGCAATGCAGAGAATCGGCCAACTGTTCCAAGGAAGTTTGATAAGGACAAGCAGTTCACCTCAGAAAGAATGGGAAGGCAATTGTCATCTTTGGGGCTTGATCCCACTTTGGCAATTAAGAGAATGCGCAGCAGATCTGCTTCTAGAGGTCGGAAAAGGGAAAGATCGCCTGAAATGAGAAGTGCTGATGGTATGGATATTGATGGTGATACACCTAGCAAAAAACAGCGTCTGAGTAGATCACTGTCACGGTCCAGGTCAGTGTCACGCCCACCACATGAAGTTGTGCCTGGAGAAGGTTACAAGGATTCTGCTCAAAAGGTCAAGGCAATTAAACTTGCAAAGAAATCTGTCAAGAAGAGAAACAAGGATGCCCGTCGTGGAGAAGCTGATAGAGTCATACCTAATCTGAAGCCCAAGCACTTGTTTTCTGGGAAGCGTTCCAATGGAAAAACTGAGAGACGCTAG
Predicted protein sequences of Glyma12g06170
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma12g06170.1 sequence type=predicted peptide gene model=Glyma12g06170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVQYNFKKITVVPNGKDVVDIILSRTQRQTPTVVHKGYAISRLRQFYMRKVKYTQQNFHDKLSTIIDEFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLIGKIAKDYVKLLKYGDSLYRCKCLKVAALGRMCTVIKRVGPSLAYLEQVRQHMARLPSIDPNTRTILICGYPNVGKSSFINKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRAAILFFLDVSGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDLQPLEGISEEDMKLTLVGQGGEPTDNNSVLLTMSTLTEEGVIAVKNAACERFHVAVPKPRDQKERPPCIPQAVLEAKAKQAAEKEKRKTEKDLEDENGGAGVYSMNLRKNYILADDEWKEDVLPEILDGHNVYDFIDPDILHRVEELEREEGMRQEEAEDGDFEIDGTELTPEQQAALAEIRKKKSLLIQQHRIKKSNAENRPTVPRKFDKDKQFTSERMGRQLSSLGLDPTLAIKRMRSRSASRGRKRERSPEMRSADGMDIDGDTPSKKQRLSRSLSRSRSVSRPPHEVVPGEGYKDSAQKVKAIKLAKKSVKKRNKDARRGEADRVIPNLKPKHLFSGKRSNGKTERR*