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Report for Sequence Feature Glyma12g06161

Feature Type:gene_model
Chromosome:Gm12
Start:4191963
stop:4195686
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g06161
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G51310AT Annotation by Michelle Graham. TAIR10: transferases;tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferases | chr1:19019185-19021735 REVERSE LENGTH=497 SoyBaseE_val: 3.00E-155ISS
GO:0006396GO-bp Annotation by Michelle Graham. GO Biological Process: RNA processing SoyBaseN/AISS
GO:0008033GO-bp Annotation by Michelle Graham. GO Biological Process: tRNA processing SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0004808GO-mf Annotation by Michelle Graham. GO Molecular Function: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity SoyBaseN/AISS
GO:0016740GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity SoyBaseN/AISS
PTHR11933Panther TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE JGI ISS
PF03054PFAM tRNA methyl transferase JGI ISS
UniRef100_B9RIE1UniRef Annotation by Michelle Graham. Most informative UniRef hit: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RIE1_RICCO SoyBaseE_val: 1.00E-152ISS
UniRef100_UPI000233D8CBUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233D8CB related cluster n=1 Tax=unknown RepID=UPI000233D8CB SoyBaseE_val: 0ISS

Expression Patterns of Glyma12g06161
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g06161 not represented in the dataset
Glyma12g06161 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g06161
ParalogEvidenceComments
Glyma11g14180 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g06161 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g057700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g06161
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g06161
>Glyma12g06161.1   sequence type=CDS   gene model=Glyma12g06161   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGAAGGTGGCGGTGCCATGGAATTGGATTTGGAGGCCAATGGCTTCTCCGCCTCTAACTGCCTTCACATGCCAAAATCTCCACACGCTAAACCCTAGGCCTCGATGTCGCAGCTTCAAGCTTTTCTGTCGACCTTCTTTTTCCGCCGTCGCGCAGCCCTCGCCTCCTCTCTCCGGCGACCTTGACCGCTACCTCCGCTGCTCCATGCCGCAGAACTCGCCGCTTCGAGTCGCCGTTCTCGTCAGCGGAGGCGTCGATAGCAGCGTCGCTCTCCGGCTGCTCCACGCCGCCGGTCACTCCTGCACCGCTTTCTACCTCAAGATATGGTTCCAAGAAGATTTCGAGAACTTTTGGTCGGAGTGCCCCTGGGAAGAGGATTTGAAGTATGCTAAAGATGTTTGTAATCAGGTTGATGTGCCGTTAGAAGTTGTTCATTTAACCGATGAATACTGGAACAATGTGGTTTCTTACCTCATTGAAGAGTATAGTAGTGGCCGAACCCCTAACCCTGATGTTCTCTGCAATACAAGAATAAAGTTTGGTGCATTCTTGGATGCAATTGGTGGCATGGGTTTTGACTATGTTGCCTCTGGGCATTATGCAAATGTTATCCACCCATGTGCTGATTGGATGGATGAGCCTTCTGTTCTGGAACTATCACAAGACATGGTAAAGGATCAAACATACTTCCTTTCACACCTCTCACAATCCCAGCTGAGGCGACTTCTTTTTCCGCTTGGTTGTATTCCCAAGGATGAAGTCCGCAAGCTTGCCACAAAATTTGATCTACCAAATAAGGATAGAAAGGATTCCCAAGGAATATGCTTTTTGGGCAAGATAAGATTCAGTGAATTTGTTACCAGACATATTGGGGAGAGAGAAGGTATCATCCTGGAAGCTGAGACAGGAGATTTCCTTGGCAAACATCGGGGATTTTGGTTTTAA
Predicted protein sequences of Glyma12g06161
>Glyma12g06161.1   sequence type=predicted peptide   gene model=Glyma12g06161   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWKVAVPWNWIWRPMASPPLTAFTCQNLHTLNPRPRCRSFKLFCRPSFSAVAQPSPPLSGDLDRYLRCSMPQNSPLRVAVLVSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFENFWSECPWEEDLKYAKDVCNQVDVPLEVVHLTDEYWNNVVSYLIEEYSSGRTPNPDVLCNTRIKFGAFLDAIGGMGFDYVASGHYANVIHPCADWMDEPSVLELSQDMVKDQTYFLSHLSQSQLRRLLFPLGCIPKDEVRKLATKFDLPNKDRKDSQGICFLGKIRFSEFVTRHIGEREGIILEAETGDFLGKHRGFWF*






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