Report for Sequence Feature Glyma12g06150
Feature Type: gene_model
Chromosome: Gm12
Start: 4185234
stop: 4191298
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma12g06150
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G12080 AT
Annotation by Michelle Graham. TAIR10: GTP-binding family protein | chr3:3847851-3851980 FORWARD LENGTH=663
SoyBase E_val: 0 ISS
GO:0006364 GO-bp
Annotation by Michelle Graham. GO Biological Process: rRNA processing
SoyBase N/A ISS
GO:0006399 GO-bp
Annotation by Michelle Graham. GO Biological Process: tRNA metabolic process
SoyBase N/A ISS
GO:0009658 GO-bp
Annotation by Michelle Graham. GO Biological Process: chloroplast organization
SoyBase N/A ISS
GO:0009793 GO-bp
Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0005525 GO-mf
Annotation by Michelle Graham. GO Molecular Function: GTP binding
SoyBase N/A ISS
KOG1191
KOG
Mitochondrial GTPase
JGI ISS
PTHR11649 Panther
MSS1/TRME-RELATED GTP-BINDING PROTEIN
JGI ISS
PTHR11649:SF5 Panther
GTP-BINDING PROTEIN ERG
JGI ISS
PF01926 PFAM
GTPase of unknown function
JGI ISS
UniRef100_B9RIC2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: GTP-binding protein enga, putative n=1 Tax=Ricinus communis RepID=B9RIC2_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1LQJ5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LQJ5_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma12g06150
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma12g06150
Paralog Evidence Comments
Glyma11g14171 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma12g06150 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.12g057600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma12g06150
Coding sequences of Glyma12g06150
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g06150.1 sequence type=CDS gene model=Glyma12g06150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCACGCACTCTAACACTAACACCTATCTCTTTCACTCTCGCTAAAACCCTAAACCCCATTTTCCCATTCCACAACACTCTTCCCTTCTCCTCTTCAATCCTTTCTCGCCAGAAGCTCACTCGCCGGAGCCTATCCCGCTCCGTCCTCCGTCCTACCGCCGGCGAACTTTCCGGCAGCGTCGACGACGATGAAGAATCGGGCGAATTGGACGACCTCGATCTCGTCGCCCTCGAGCAAGAAGCCAAGGATGCCGTCGAAGCGTATTCAAGCTCTCTGTCTCAAATTTTGAGCATTGAAGACGAGGAGAAAAGTGATCGCAAGGAATCAGCTCAATCACGCAGGAAGAGTCCACGTAGAACAAAAATTATTCCTGACAATCTTCTCCCAAGGGTTGCAATTGTTGGAAGGCCAAATGTTGGCAAATCAGCATTATTTAATCGTCTTGTTGGGGGAAACAGGGCAATTGTGGTGGATGAACCTGGGGTCACCAGGGATCGTTTGTATGGTCGATCGTATTGGGGAGAGCATGAATTCATGGTAGTCGACACAGGTGGGGTTATCACCGTTTCAAAATCACAAGCTACTGTTATGGAAGAGTTGGCTATTACTACTACCATTGGTATGGATGGCATTCCACTTGCTGTTAGAGAGGCAGCTGTTGCCAGGATGCCCTCAATGATTGAGAGACAAGCAACTGCAGCTGTGGAAGAATCATCTGTGATTATTTTTCTGGTTGATGGTCAGGCCGGTCTAACAGCAGCAGACGAGGAAATTGCTGATTGGCTACGTAAAAACTACTCAGATAAATATGTCATTCTTGCAGTTAACAAGTGTGAATCTCCACGCAAAAGAATTATGCAGGCATCTGAATTTTGGTCCCTTGGATTTGAACCACTTCCAATATCAGCTATCTCAGGGACTGGAACTGGAGAGCTTCTTGACCTTGTTTGTTCTGGCCTACAGAAAATTGAGGAATCTAATAATCTTGTTGAAGAAGATTATGTTCCAGCAATTTCAATTGTTGGTAGACCTAATGTTGGCAAAAGTAGCATTTTGAATGCACTGGTTGGTGAGGACAGAACAATAGTCAGCCCCATCAGTGGCACTACCCGTGATGCTATTGATACTGAATTTACTGGACCAGATGGACAGAAGTTCCAACTTATTGATACTGCTGGAATCAGGAAAAGAACAGCCATTGCTTCAGCTGGGAGTACAACAGAGGCTTTATCAGTGAATCGAGCATTTCGTGCTATTCGTCGTTCTGATGTTGTTGCTCTTGTCATCGAGGCCATGGCTTGTATCACAGAACAGGACTACAAGATAGCTGAAAGGATAGAAAAAGAAGGGAAAGGTTGTGTGATAGTTGTAAACAAGTGGGATACAATACCAAATAAAAACCAGCAGACTGCATCATACTATGAGCAAGATGTCAGGGAGAAGCTTCGCTCACTTGTCTGGGCTCCAATTGTTTATTCTACTGCTGTAGCTGGTCATAGTGTTGACAAGATTATTGTTGCTGCTATTGAAGTTGAAAAGGAGAGATCAAGAAGACTTGGGACTTCTATATTGAATCAAGTAGTTCAGGAAGCAGTAGGTTTTAAGCCTCCTCCCAGGACACGCGGTGGAAAAAGAGGGCGTGTTTACTATTGCACTCAGGCTGCTATAAGGCCACCTACATTTGTGTTCTTCGTCAATGATGCAAAACTTTTTCCTGAGACTTACCGGCGCTATATGGAGAAGCAACTGCGTACAGATGCAGGTTTTTCTGGTACACCCATTCGACTTCTCTGGCGCAGCAGAAGGAAAATGGGAAAAGATGAAGGCAAACCTGTAACAAAGACCCGAGAAAATCTTACATCAAATGATCGAAAATTGGTGTCAACTACACCATAG
Predicted protein sequences of Glyma12g06150
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma12g06150.1 sequence type=predicted peptide gene model=Glyma12g06150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MARTLTLTPISFTLAKTLNPIFPFHNTLPFSSSILSRQKLTRRSLSRSVLRPTAGELSGSVDDDEESGELDDLDLVALEQEAKDAVEAYSSSLSQILSIEDEEKSDRKESAQSRRKSPRRTKIIPDNLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRLYGRSYWGEHEFMVVDTGGVITVSKSQATVMEELAITTTIGMDGIPLAVREAAVARMPSMIERQATAAVEESSVIIFLVDGQAGLTAADEEIADWLRKNYSDKYVILAVNKCESPRKRIMQASEFWSLGFEPLPISAISGTGTGELLDLVCSGLQKIEESNNLVEEDYVPAISIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPDGQKFQLIDTAGIRKRTAIASAGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYKIAERIEKEGKGCVIVVNKWDTIPNKNQQTASYYEQDVREKLRSLVWAPIVYSTAVAGHSVDKIIVAAIEVEKERSRRLGTSILNQVVQEAVGFKPPPRTRGGKRGRVYYCTQAAIRPPTFVFFVNDAKLFPETYRRYMEKQLRTDAGFSGTPIRLLWRSRRKMGKDEGKPVTKTRENLTSNDRKLVSTTP*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
