Report for Sequence Feature Glyma12g06060
Feature Type: gene_model
Chromosome: Gm12
Start: 4124675
stop: 4128659
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma12g06060
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G20870 AT
Annotation by Michelle Graham. TAIR10: ZIP metal ion transporter family | chr3:7309499-7312476 REVERSE LENGTH=276
SoyBase E_val: 1.00E-129 ISS
GO:0030001 GO-bp
Annotation by Michelle Graham. GO Biological Process: metal ion transport
SoyBase N/A ISS
GO:0055085 GO-bp
Annotation by Michelle Graham. GO Biological Process: transmembrane transport
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0046873 GO-mf
Annotation by Michelle Graham. GO Molecular Function: metal ion transmembrane transporter activity
SoyBase N/A ISS
PTHR11065 Panther
GUFA PROTEIN - RELATED
JGI ISS
PTHR11065:SF5 Panther
INTEGRAL MEMBRANE PROTEIN
JGI ISS
PF02535 PFAM
ZIP Zinc transporter
JGI ISS
UniRef100_G7JDP0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Zinc transporter zupT n=1 Tax=Medicago truncatula RepID=G7JDP0_MEDTR
SoyBase E_val: 9.00E-147 ISS
UniRef100_UPI000233C418 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233C418 related cluster n=1 Tax=unknown RepID=UPI000233C418
SoyBase E_val: 2.00E-166 ISS
Expression Patterns of Glyma12g06060
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma12g06060
Paralog Evidence Comments
Glyma11g14090 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma12g06060 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.12g056900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma12g06060
Coding sequences of Glyma12g06060
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g06060.2 sequence type=CDS gene model=Glyma12g06060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATTCGCAGGTCTTGCTGGGTGTTGCACTTTCATCCGTGGGTGGTTTCAGCACTTCCATCGGTGCACTTTTCGTAATCCTTAGTCAAGCTCCAAGTTTGAAGATGCTTGGACTGTTACAGGGTTTTGCTGCTGGTTTGATGTTGAGTATATCATTCTTTGATCTGACTCATAATGCCTTGAACTCACTTGGCTTCTTGAGAGGCAACCTTTGGTTTTTTGCTGGTGTCATATTCTTTGCTGTTGTTGCCAAATTTATACCAGAACCAACAGTTGCTCCTCCCACTTCAGATGAAAAGAAAGTTGGGAAAGAAGGAAACAAAGGCATTATGAAAAGGCGTCGCCGTCAAGTTTTAATCAGTGGAGTTGTTACAGCCATAGGTATAAGTTTGCATAATTTTCCAGAAGGAATGGCAGTGTACCTTGGATCCATGAAGGGCATTCGTGTTGGTCTTAACCTTGCACTGGCCATTGCTCTGCACAATATCCCAGAGGGTGTTGCTGTTGCACTTCCTGTCTATTTTGCGACACAGAGCAAATGGGAGGCATTCAAATTGGCATCACTTTCTGGCTTTGCTGAGCCACTGGGCGTTGTAATTGTAGCCTGTTTATTCCCTACCAGCCTAAATCCCGAGATTCTTGAAGGTATCCTTGGATCAGTTGGTGGAGTCATGGCTTTTCTAACCCTTCATGAAATGCTGCCACTGGCTGTTAGATATTAA
Predicted protein sequences of Glyma12g06060
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma12g06060.2 sequence type=predicted peptide gene model=Glyma12g06060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDSQVLLGVALSSVGGFSTSIGALFVILSQAPSLKMLGLLQGFAAGLMLSISFFDLTHNALNSLGFLRGNLWFFAGVIFFAVVAKFIPEPTVAPPTSDEKKVGKEGNKGIMKRRRRQVLISGVVTAIGISLHNFPEGMAVYLGSMKGIRVGLNLALAIALHNIPEGVAVALPVYFATQSKWEAFKLASLSGFAEPLGVVIVACLFPTSLNPEILEGILGSVGGVMAFLTLHEMLPLAVRY*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
