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Report for Sequence Feature Glyma12g06016

Feature Type:gene_model
Chromosome:Gm12
Start:4109429
stop:4112173
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G51200AT Annotation by Michelle Graham. TAIR10: A20/AN1-like zinc finger family protein | chr1:18985690-18986211 FORWARD LENGTH=173 SoyBaseE_val: 3.00E-62ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0048573GO-bp Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG3173 KOG Predicted Zn-finger protein JGI ISS
PTHR10634Panther PRK1-ASSOCIATED ZINC FINGER PROTEIN JGI ISS
PF01428PFAM AN1-like Zinc finger JGI ISS
PF01754PFAM A20-like zinc finger JGI ISS
UniRef100_A2YEZ6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger A20 and AN1 domain-containing stress-associated protein 8 n=3 Tax=Oryza sativa RepID=SAP8_ORYSI SoyBaseE_val: 2.00E-79ISS
UniRef100_C6SXF9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SXF9_SOYBN SoyBaseE_val: 3.00E-124ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g06016 not represented in the dataset

Glyma12g06016 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma11g14050 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g056500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma12g06016.1   sequence type=CDS   gene model=Glyma12g06016   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCATGACAAGACTGGGTGCCAAGCTCCTCCTGAAGGTCCTATATTGTGCATCAACAACTGTGGGTTTTTTGGAAGTGCAGCTACCATGAACATGTGTTCTAAATGCCACAAAGACATATTGCTGAAACAGGAGCAGGCCAAGCTTGCAGCATCATCCATTGGGAATATTATGAATGGGTCATCAAGCAGCACTGAAAAGGAACCTGTTGTTGCTGCTGCTGCTAATATTGATATCCCAGTTATTCCAGTAGAGCCTAAAACTGTCTCTGTGCAACCTTTATTTGGTTCAGGTCCAGAGGGGAGTGTTGAGGCAAAGCCGAAGGATGGACCAAAACGTTGCAGCAGCTGCAACAAGCGAGTTGGTTTGACAGGGTTTAATTGTCGATGTGGTGACCTTTTTTGTGCTGTACATCGCTACTCAGACAAGCATAATTGCCCATTTGATTACCGCACTGCCGCTCAAGATGCTATAGCTAAAGCAAACCCAGTTGTCAAGGCTGAAAAGCTTGATAAGATCTAA

>Glyma12g06016.1   sequence type=predicted peptide   gene model=Glyma12g06016   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDHDKTGCQAPPEGPILCINNCGFFGSAATMNMCSKCHKDILLKQEQAKLAASSIGNIMNGSSSSTEKEPVVAAAANIDIPVIPVEPKTVSVQPLFGSGPEGSVEAKPKDGPKRCSSCNKRVGLTGFNCRCGDLFCAVHRYSDKHNCPFDYRTAAQDAIAKANPVVKAEKLDKI*







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