Report for Sequence Feature Glyma12g06016
Feature Type: gene_model
Chromosome: Gm12
Start: 4109429
stop: 4112173
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma12g06016
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G51200 AT
Annotation by Michelle Graham. TAIR10: A20/AN1-like zinc finger family protein | chr1:18985690-18986211 FORWARD LENGTH=173
SoyBase E_val: 3.00E-62 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0048573 GO-bp
Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
KOG3173
KOG
Predicted Zn-finger protein
JGI ISS
PTHR10634 Panther
PRK1-ASSOCIATED ZINC FINGER PROTEIN
JGI ISS
PF01428 PFAM
AN1-like Zinc finger
JGI ISS
PF01754 PFAM
A20-like zinc finger
JGI ISS
UniRef100_A2YEZ6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger A20 and AN1 domain-containing stress-associated protein 8 n=3 Tax=Oryza sativa RepID=SAP8_ORYSI
SoyBase E_val: 2.00E-79 ISS
UniRef100_C6SXF9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SXF9_SOYBN
SoyBase E_val: 3.00E-124 ISS
Expression Patterns of Glyma12g06016
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma12g06016
Paralog Evidence Comments
Glyma11g14050 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma12g06016 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.12g056500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma12g06016
Coding sequences of Glyma12g06016
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g06016.1 sequence type=CDS gene model=Glyma12g06016 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGACCATGACAAGACTGGGTGCCAAGCTCCTCCTGAAGGTCCTATATTGTGCATCAACAACTGTGGGTTTTTTGGAAGTGCAGCTACCATGAACATGTGTTCTAAATGCCACAAAGACATATTGCTGAAACAGGAGCAGGCCAAGCTTGCAGCATCATCCATTGGGAATATTATGAATGGGTCATCAAGCAGCACTGAAAAGGAACCTGTTGTTGCTGCTGCTGCTAATATTGATATCCCAGTTATTCCAGTAGAGCCTAAAACTGTCTCTGTGCAACCTTTATTTGGTTCAGGTCCAGAGGGGAGTGTTGAGGCAAAGCCGAAGGATGGACCAAAACGTTGCAGCAGCTGCAACAAGCGAGTTGGTTTGACAGGGTTTAATTGTCGATGTGGTGACCTTTTTTGTGCTGTACATCGCTACTCAGACAAGCATAATTGCCCATTTGATTACCGCACTGCCGCTCAAGATGCTATAGCTAAAGCAAACCCAGTTGTCAAGGCTGAAAAGCTTGATAAGATCTAA
Predicted protein sequences of Glyma12g06016
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma12g06016.1 sequence type=predicted peptide gene model=Glyma12g06016 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDHDKTGCQAPPEGPILCINNCGFFGSAATMNMCSKCHKDILLKQEQAKLAASSIGNIMNGSSSSTEKEPVVAAAANIDIPVIPVEPKTVSVQPLFGSGPEGSVEAKPKDGPKRCSSCNKRVGLTGFNCRCGDLFCAVHRYSDKHNCPFDYRTAAQDAIAKANPVVKAEKLDKI*