Report for Sequence Feature Glyma12g05980
Feature Type: gene_model
Chromosome: Gm12
Start: 4043644
stop: 4050813
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma12g05980
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G12950 AT
Annotation by Michelle Graham. TAIR10: Putative glycosyl hydrolase of unknown function (DUF1680) | chr5:4093117-4096806 FORWARD LENGTH=861
SoyBase E_val: 0 ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0005773 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: vacuole
SoyBase N/A ISS
GO:0009505 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
PF07944 PFAM
Putative glycosyl hydrolase of unknown function (DUF1680)
JGI ISS
UniRef100_UPI000233C408 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233C408 related cluster n=1 Tax=unknown RepID=UPI000233C408
SoyBase E_val: 0 ISS
Expression Patterns of Glyma12g05980
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma12g05980
Paralog Evidence Comments
Glyma11g14020 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma12g05980 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.12g055900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma12g05980
Coding sequences of Glyma12g05980
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g05980.1 sequence type=CDS gene model=Glyma12g05980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCCGTGTTGTCCATTGTTCATCCGAGAATGGAGGCGTTAGTGTTTGCGCTTGTGGCCATTCTGTTGTGTGGTTGTGATGCTGCTAAAGAATGCACAAACATTCCTACACAATCTCATACATTCAGGTATGAGCTATTGATGTCCACTAATGCAACGTGGAAAGCAGAGGTGATGGATCACTACCATTTGACGCCAACGGATGAAACGGCTTGGGCGGATTTGCTGCCGAGGAAGTTATTGTCAGAACAGAACCAACATGACTGGGGGGTGATGTATAGGAAGATTAAGAACATGGGTGTGTTCAAGTCAGGTGAAGGATTTCTCAAAGAAGTGCCTCTTCAGGATGTGAGGTTGCATAAGGATTCCATCCATGGTAGAGCACAGCAAACAAATTTGGAGTATCTGTTGATGTTGGATGTGGACAGCTTGATTTGGAGCTTCAGGAAGACAGCTGCTCTATCCACACCTGGGACTCCTTATGGAGGGTGGGAAGGTCCAGAAGTTGAGCTCAGAGGTCATTTTGTTGGGCATTACTTGAGCGCATCAGCTCTAATGTGGGCCAGCACACAGAATGATACCCTGAAGCAGAAAATGTCATCTCTTGTTGCTGGTCTGTCTGCCTGTCAGGAGAAAATTGGAACCGGATATCTATCTGCATTTCCATCTGAGTTTTTTGATCGATTTGAAGCTGTTCAACCTGTTTGGGCTCCCTATTATACCATTCACAAGATCTTGGCTGGCCTCTTGGATCAACATACTTTTGCTGGAAACCCTCAAGCTCTAAAAATGGTAACATGGATGGTTGATTACTTCTACAACAGAGTGCAGAATGTAATAACAAAGTACACTGTAAATAGACACTATCAATCAATGAATGAAGAAACTGGAGGAATGAATGATGTCCTTTATAGATTATACAGCATAACGGGAGATTCTAAGCACCTAGTGTTGGCTCACCTTTTTGACAAGCCATGCTTTTTAGGGTTGCTTGCAGTGCAGGCTAATGACATAGCTGATTTACATGCTAATACACATATCCCAATTGTTGTTGGATCTCAAATGCGGTATGAAATCACAGGCGATCCACTTTATAAGCAAATTGGGACATTCTTTATGGACCTCGTAAACTCTTCTCACAGCTACGCAACTGGAGGGACATCAGTCAGAGAGTTCTGGAGTGATCCAAAGAGAATAGCAGACAACTTAAGAACGACAGAGAATGAAGAATCATGCACAACTTATAATATGTTGAAGGTTTCGCGTCACCTGTTTAGATGGACCAAAGAAGTCTCTTATGCAGACTATTATGAGCGTGCCTTAACCAATGGTGTGCTCAGCATTCAAAGAGGAACAGATCCTGGAGTGATGATTTATATGCTTCCACTAGGTTTTGCGGTTTCAAAGGCTAGAACTGGACATAGTTGGGGAACACAGTTTGACTCTTTCTGGTGCTGCTATGGAACAGGAATTGAATCATTCTCAAAGCTGGGGGATTCTATCTATTTTGAAGAGGAAGGCAAAGATCCTACACTTTACATCATTCAGTACATTTCAAGCTCATTTAATTGGAAATCAGGCAAAATTTTGCTCAATCAGACAGTTGTTCCAGCTTCTTCATCGGATCCTTACCTACGAGTCACATTTACATTTTCTCCTGTTGAGAATACTTTGTCTACATTGAACTTTCGACTACCAAGTTGGACTCTTCTGGATGGTGCCAAGGGGATATTAAATGGTCAAACTTTATCTCTGCCAAATCCAGGAAATTATTTGTCAATCACAAGACAATGGAGTGCTAGTGACAAGCTGACCCTTCAGCTGCCCCTTACCGTAAGGACAGAGGCCATAAAAGATGACAGGCCTGAATATGCATCTGTTCAAGCAATTCTTTATGGTCCTTACCTTCTTGCTGGTCATACAACCGGTGGTGATTGGAACCTTAAAGCTGGGGCTAACAATGCAGACTGGATTACTCCTATTCCTGCCAGTTACAATAGTCAGCTAGTTTCTTTTTTCCGAGACTTTGAAGGATCAACTTTTGTCTTGGCAAATTCAAACCAATCAGTTTCAATGCAAAAATTGCCTGAATTTGGCACTGATTTGGCTCTTCAGGCAACCTTTAGGATTGTCCTAGAAGAATCTTCCTCAAAGTTTTCAAAATTAGCAGATGCTAATGATAGATCAGTGATGTTAGAACCATTTGATCTTCCTGGAATGAATGTGATTCACCAAGGAGCAGGCAAACCTCTTCTCACTGTAGATTCTTCCCAAGGGGGGCCGTCTGCTGTTTTTCTTTTGGTACCAGGATTGGATGGACGAAATGAAACCGTATCTTTAGAATCCCAGAGCAACAAGGGATGTTATGTGTACAGTGGTATGAGCCCTAGTGCAGGAGTCAAGCTCAGTTGCAAATCTGATTCTGATGCTACTTTTAACCAAGCAGCAAGCTTTGTTGCTCTGCAAGGATTGAGCCAATACAATCCTATCAGTTTTGTGGCTAAAGGGGCAAACAGGAATTTTCTTTTGCAGCCATTACTCTCATTCAGAGACGAGCATTACACAGTTTATTTCAATATTCAAGATTGA
Predicted protein sequences of Glyma12g05980
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma12g05980.1 sequence type=predicted peptide gene model=Glyma12g05980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPVLSIVHPRMEALVFALVAILLCGCDAAKECTNIPTQSHTFRYELLMSTNATWKAEVMDHYHLTPTDETAWADLLPRKLLSEQNQHDWGVMYRKIKNMGVFKSGEGFLKEVPLQDVRLHKDSIHGRAQQTNLEYLLMLDVDSLIWSFRKTAALSTPGTPYGGWEGPEVELRGHFVGHYLSASALMWASTQNDTLKQKMSSLVAGLSACQEKIGTGYLSAFPSEFFDRFEAVQPVWAPYYTIHKILAGLLDQHTFAGNPQALKMVTWMVDYFYNRVQNVITKYTVNRHYQSMNEETGGMNDVLYRLYSITGDSKHLVLAHLFDKPCFLGLLAVQANDIADLHANTHIPIVVGSQMRYEITGDPLYKQIGTFFMDLVNSSHSYATGGTSVREFWSDPKRIADNLRTTENEESCTTYNMLKVSRHLFRWTKEVSYADYYERALTNGVLSIQRGTDPGVMIYMLPLGFAVSKARTGHSWGTQFDSFWCCYGTGIESFSKLGDSIYFEEEGKDPTLYIIQYISSSFNWKSGKILLNQTVVPASSSDPYLRVTFTFSPVENTLSTLNFRLPSWTLLDGAKGILNGQTLSLPNPGNYLSITRQWSASDKLTLQLPLTVRTEAIKDDRPEYASVQAILYGPYLLAGHTTGGDWNLKAGANNADWITPIPASYNSQLVSFFRDFEGSTFVLANSNQSVSMQKLPEFGTDLALQATFRIVLEESSSKFSKLADANDRSVMLEPFDLPGMNVIHQGAGKPLLTVDSSQGGPSAVFLLVPGLDGRNETVSLESQSNKGCYVYSGMSPSAGVKLSCKSDSDATFNQAASFVALQGLSQYNPISFVAKGANRNFLLQPLLSFRDEHYTVYFNIQD*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
