SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G51140 | AT | Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:18943802-18945613 REVERSE LENGTH=379 | SoyBase | E_val: 4.00E-80 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0048573 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| PTHR10985 | Panther | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED | JGI | ISS | |
| PTHR10985:SF42 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00010 | PFAM | Helix-loop-helix DNA-binding domain | JGI | ISS | |
| UniRef100_G7IE46 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bHLH130 n=1 Tax=Medicago truncatula RepID=G7IE46_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D8C5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D8C5 related cluster n=1 Tax=unknown RepID=UPI000233D8C5 | SoyBase | E_val: 0 | ISS |
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Glyma12g05930 not represented in the dataset |
Glyma12g05930 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g13960 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g055400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g05930.3 sequence type=transcript gene model=Glyma12g05930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAATTTGATGATGATGATGTGAATGAGAGAGAGAGAGAGAGGTGTTGTGCAGTGGTGGAAGAGTGAGGCAGGCAATGAAGTCATTTCACCTCGTATACTTGCCATTTTATCAGAACCTACCTTTACTTCTAAAAATATAGGATTAACTTGTGTTCTTTCTCCCTTCGGAAGCCCCCCTCTGCCACGTTCATCTCCCATTTGGTGGTTCCTTCCAAAAATTGAGGGCATTCTAGTAAAACTCTAACACAACACACACACCAAATCTGAGAGCTGGATTTATGTCTCTGTTTACTTCTCATTGGCTGCACCTCTTCACAAACTAGATGGAATGTTATTTTATAATCCTTCTCCATCTTTTCTCTTGAGCCTTCCTTCCCACACCAATCTTCTCCACCACTTCACACAACCTTAAATCCAACCCAAAACCAAAAGAAACACACACACTCAGAAACACCAAGAGAAGAATTTTATTTTTTTCAGGATTCCGAGAAGTTGGTGTGATCTGATGCTAGTGTTTCGAAGATAATCTGAGAAGAACAAAAAGAGAAAAAAGTTTGATTGTTTTCTTTTTCCAATGGAGTCAGATCTTCGGCAGCACCCTCCCATGTTTTTGGATCACCACCACCACCAGCAGCAGATGAATTCTGGGTTGACACGGTACCGATCGGCGCCAAGTTCGTATTTTTCGAGCATCATTGACCGTGAGTTCTACGAACACGTTTTCAATCGACCCTCTAGCCCCGAAACAGAGCGAATGTTGACACGCTTTGTGGATAGTCTTGGTGGAGGTGATGCTGCTGATGCTGATGCAGAGGACTCACTTGCTAATACTCAGAATCCCCCAACAACTGTTGTTGCGGTTAAGGAAGAGGTTAATCATCAACCTCAGGATGTGACATCCATGAATAATGAACCACTTGTTCTCCAACAACAACAGCAGCAACAAAGTAATAATATGAATAATTATGGCTCTTCTGGTACTCAGAATTTTTACCAAAGCACTGGACGACCACCTTTGCCAAACCAGATGAAAACTGGTCGTGGAAGTAGTTCCAGTCTTATCAGACATGGTAGCTCACCTGCTGGATTGTTTTCAAACATTAACATTGATACTGGCTATGCTGCTGTTAGAGGCATGGGAACTATGGGAGCTGCTGCTGCTAATAACACCACCGAGGAAGCAAACTTTTCACCCGCAACAAGGATGAAGAATGCAACAAACTTCTCTTCAGGACTAATGTCATCAAGGCCTGGAATTGGAAACAAGAGCAACACACAGAACAATGCAGAAAATGAAGGGTTTGCTGAAAGCCAGGGCAATGAATTTATCCCTGCAGGTTTCCCCGTTGGTCCGTGGGATGATTCTGCAATCATGTCTGACAATATGACAGGTCTGAAGAGATTTAGAGATGAAGATGTGAAACCATTTTCTGGTTTAAATGCACCTGAAAGTCAGAATGAAACTGGAGGCCAACAACCTTCTTCTTCTGCTTTGGCTCATCAATTGAGTTTGCCAAACACTTCTGCAGAAATGGCAGCCATTGAGAAGTTTCTTCAGCTCTCGGATTCTGTTCCTTGCAAAATTCGTGCCAAGCGGGGCTGTGCCACTCACCCTAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAAATTAGTGAGCGAATGAGGAAGCTACAAGATCTGGTCCCCAACATGGATAAGCAAACAAACACAGCAGACATGTTGGACTTGGCTGTTGAGTACATTAAAGACCTTCAAAACCAAGTTGAGGCACTTTCGGACAATCGGGCAAAGTGTACGTGTTTACACAAGAAGCAGCAATAACGGAAAAGGAGGAGGGTACCCGCGTCATTCCCTGTACAGCTTAGTAATAATTTGGTCTAGAAACTAGCGCACCTTTCCGATAATTATCTAGCTACATCACTTCTTCTGCGCTTGTTTGGGAGTGTGGTGGCAAAAGTTGAGTTTATATATGATCGATCAATATTTGATGCCCACATATTCAAGGCATGGTGTACAAAATTTTCTGATATGTAAGTCTATTTGCCTTTACTCTTAGGGGCCCCCATTTACGGGGATGATGGAGGATGGGGTGAGTTGGAAAATTGAAATTTTCATTTTTGCATCTTCAAGGTTCAGCCATAACGTTAAAAAAAAGAGAGAGAGAGAGAGAGAATGTTATGTATGGGTTTGGTTTCACATTCAAGGACATGGGAAACATGGGGGGACCGAAGCCAACATAGTTTTGTTGGTTATATATATACTTGGATGCCTATTGAGTAGTGTGTGTTTGTACTTTTATTTTTTTTCTTTTTTTTTATTTTTGTTATGATTTTAATGCGAAGTAGTTGTCATTAAAAGTATGACACATTTGAATACATATGAGTATTTTTTTTTATAA
>Glyma12g05930.2 sequence type=CDS gene model=Glyma12g05930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTCAGATCTTCGGCAGCACCCTCCCATGTTTTTGGATCACCACCACCACCAGCAGCAGATGAATTCTGGGTTGACACGGTACCGATCGGCGCCAAGTTCGTATTTTTCGAGCATCATTGACCGTGAGTTCTACGAACACGTTTTCAATCGACCCTCTAGCCCCGAAACAGAGCGAATGTTGACACGCTTTGTGGATAGTCTTGGTGGAGGTGATGCTGCTGATGCTGATGCAGAGGACTCACTTGCTAATACTCAGAATCCCCCAACAACTGTTGTTGCGGTTAAGGAAGAGGTTAATCATCAACCTCAGGATGTGACATCCATGAATAATGAACCACTTGTTCTCCAACAACAACAGCAGCAACAAAGTAATAATATGAATAATTATGGCTCTTCTGGTACTCAGAATTTTTACCAAAGCACTGGACGACCACCTTTGCCAAACCAGATGAAAACTGGTCGTGGAAGTAGTTCCAGTCTTATCAGACATGGTAGCTCACCTGCTGGATTGTTTTCAAACATTAACATTGATACTGGCTATGCTGCTGTTAGAGGCATGGGAACTATGGGAGCTGCTGCTGCTAATAACACCACCGAGGAAGCAAACTTTTCACCCGCAACAAGGATGAAGAATGCAACAAACTTCTCTTCAGGACTAATGTCATCAAGGCCTGGAATTGGAAACAAGAGCAACACACAGAACAATGCAGAAAATGAAGGGTTTGCTGAAAGCCAGGGCAATGAATTTATCCCTGCAGGTTTCCCCGTTGGTCCGTGGGATGATTCTGCAATCATGTCTGACAATATGACAGGTCTGAAGAGATTTAGAGATGAAGATGTGAAACCATTTTCTGGTTTAAATGCACCTGAAAGTCAGAATGAAACTGGAGGCCAACAACCTTCTTCTTCTGCTTTGGCTCATCAATTGAGTTTGCCAAACACTTCTGCAGAAATGGCAGCCATTGAGAAGTTTCTTCAGCTCTCGGATTCTGTTCCTTGCAAAATTCGTGCCAAGCGGGGCTGTGCCACTCACCCTAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAAATTAGTGAGCGAATGAGGAAGCTACAAGATCTGGTCCCCAACATGGATAAGCAAACAAACACAGCAGACATGTTGGACTTGGCTGTTGAGTACATTAAAGACCTTCAAAACCAAGTTGAGGCACTTTCGGACAATCGGGCAAAGTGTACGTGTTTACACAAGAAGCAGCAATAA >Glyma12g05930.3 sequence type=CDS gene model=Glyma12g05930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTCAGATCTTCGGCAGCACCCTCCCATGTTTTTGGATCACCACCACCACCAGCAGCAGATGAATTCTGGGTTGACACGGTACCGATCGGCGCCAAGTTCGTATTTTTCGAGCATCATTGACCGTGAGTTCTACGAACACGTTTTCAATCGACCCTCTAGCCCCGAAACAGAGCGAATGTTGACACGCTTTGTGGATAGTCTTGGTGGAGGTGATGCTGCTGATGCTGATGCAGAGGACTCACTTGCTAATACTCAGAATCCCCCAACAACTGTTGTTGCGGTTAAGGAAGAGGTTAATCATCAACCTCAGGATGTGACATCCATGAATAATGAACCACTTGTTCTCCAACAACAACAGCAGCAACAAAGTAATAATATGAATAATTATGGCTCTTCTGGTACTCAGAATTTTTACCAAAGCACTGGACGACCACCTTTGCCAAACCAGATGAAAACTGGTCGTGGAAGTAGTTCCAGTCTTATCAGACATGGTAGCTCACCTGCTGGATTGTTTTCAAACATTAACATTGATACTGGCTATGCTGCTGTTAGAGGCATGGGAACTATGGGAGCTGCTGCTGCTAATAACACCACCGAGGAAGCAAACTTTTCACCCGCAACAAGGATGAAGAATGCAACAAACTTCTCTTCAGGACTAATGTCATCAAGGCCTGGAATTGGAAACAAGAGCAACACACAGAACAATGCAGAAAATGAAGGGTTTGCTGAAAGCCAGGGCAATGAATTTATCCCTGCAGGTTTCCCCGTTGGTCCGTGGGATGATTCTGCAATCATGTCTGACAATATGACAGGTCTGAAGAGATTTAGAGATGAAGATGTGAAACCATTTTCTGGTTTAAATGCACCTGAAAGTCAGAATGAAACTGGAGGCCAACAACCTTCTTCTTCTGCTTTGGCTCATCAATTGAGTTTGCCAAACACTTCTGCAGAAATGGCAGCCATTGAGAAGTTTCTTCAGCTCTCGGATTCTGTTCCTTGCAAAATTCGTGCCAAGCGGGGCTGTGCCACTCACCCTAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAAATTAGTGAGCGAATGAGGAAGCTACAAGATCTGGTCCCCAACATGGATAAGCAAACAAACACAGCAGACATGTTGGACTTGGCTGTTGAGTACATTAAAGACCTTCAAAACCAAGTTGAGGCACTTTCGGACAATCGGGCAAAGTGTACGTGTTTACACAAGAAGCAGCAATAA
>Glyma12g05930.2 sequence type=predicted peptide gene model=Glyma12g05930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESDLRQHPPMFLDHHHHQQQMNSGLTRYRSAPSSYFSSIIDREFYEHVFNRPSSPETERMLTRFVDSLGGGDAADADAEDSLANTQNPPTTVVAVKEEVNHQPQDVTSMNNEPLVLQQQQQQQSNNMNNYGSSGTQNFYQSTGRPPLPNQMKTGRGSSSSLIRHGSSPAGLFSNINIDTGYAAVRGMGTMGAAAANNTTEEANFSPATRMKNATNFSSGLMSSRPGIGNKSNTQNNAENEGFAESQGNEFIPAGFPVGPWDDSAIMSDNMTGLKRFRDEDVKPFSGLNAPESQNETGGQQPSSSALAHQLSLPNTSAEMAAIEKFLQLSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVEYIKDLQNQVEALSDNRAKCTCLHKKQQ* >Glyma12g05930.3 sequence type=predicted peptide gene model=Glyma12g05930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESDLRQHPPMFLDHHHHQQQMNSGLTRYRSAPSSYFSSIIDREFYEHVFNRPSSPETERMLTRFVDSLGGGDAADADAEDSLANTQNPPTTVVAVKEEVNHQPQDVTSMNNEPLVLQQQQQQQSNNMNNYGSSGTQNFYQSTGRPPLPNQMKTGRGSSSSLIRHGSSPAGLFSNINIDTGYAAVRGMGTMGAAAANNTTEEANFSPATRMKNATNFSSGLMSSRPGIGNKSNTQNNAENEGFAESQGNEFIPAGFPVGPWDDSAIMSDNMTGLKRFRDEDVKPFSGLNAPESQNETGGQQPSSSALAHQLSLPNTSAEMAAIEKFLQLSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVEYIKDLQNQVEALSDNRAKCTCLHKKQQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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