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Report for Sequence Feature Glyma12g05833

Feature Type:gene_model
Chromosome:Gm12
Start:3940730
stop:3942633
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G42260AT Annotation by Michelle Graham. TAIR10: beta glucosidase 12 | chr5:16898712-16900235 FORWARD LENGTH=507 SoyBaseE_val: 4.00E-34ISS
GO:0005975GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004553GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds SoyBaseN/AISS
GO:0043169GO-mf Annotation by Michelle Graham. GO Molecular Function: cation binding SoyBaseN/AISS
PTHR10353Panther GLYCOSIDE HYDROLASES JGI ISS
PF00232PFAM Glycosyl hydrolase family 1 JGI ISS
UniRef100_A0SXU2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glycosylhydrolase family 1 (Fragment) n=1 Tax=Leucaena leucocephala RepID=A0SXU2_LEULE SoyBaseE_val: 6.00E-44ISS
UniRef100_UPI000233D12EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233D12E related cluster n=1 Tax=unknown RepID=UPI000233D12E SoyBaseE_val: 3.00E-47ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g05833 not represented in the dataset

Glyma12g05833 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma12g05833.1   sequence type=CDS   gene model=Glyma12g05833   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCATCTTTGGCACCGCCTCCTCCGCATACCAGTACGAAGGTGCTGCAAATGAAGGAGGCAGAGGACCAAGTACATGGGATACCTATTCTCATAAATATCCAGAAAAAATATCGGATAGAAGCAATGGAGATGTAGCAGTTGATCAATATCATCACTATAAGGAAGATGTTGGGATCATGAAGTATATGAACACTGATGCTTACAGATTCTCCATCTCTTGGTCAAGGATATTGCCAAGTAATCAAATCGGATTTAGTTTCATCCTTACCAGTTTCAGTTAG

>Glyma12g05833.1   sequence type=predicted peptide   gene model=Glyma12g05833   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
FIFGTASSAYQYEGAANEGGRGPSTWDTYSHKYPEKISDRSNGDVAVDQYHHYKEDVGIMKYMNTDAYRFSISWSRILPSNQIGFSFILTSFS*







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