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Report for Sequence Feature Glyma12g05821

Feature Type:gene_model
Chromosome:Gm12
Start:3926745
stop:3931849
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g05821
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G44450AT Annotation by Michelle Graham. TAIR10: beta glucosidase 15 | chr2:18340966-18343744 FORWARD LENGTH=506 SoyBaseE_val: 0ISS
GO:0005975GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process SoyBaseN/AISS
GO:0010359GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of anion channel activity SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0009505GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004553GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds SoyBaseN/AISS
GO:0043169GO-mf Annotation by Michelle Graham. GO Molecular Function: cation binding SoyBaseN/AISS
KOG0626 KOG Beta-glucosidase, lactase phlorizinhydrolase, and related proteins JGI ISS
PTHR10353Panther GLYCOSIDE HYDROLASES JGI ISS
PF00232PFAM Glycosyl hydrolase family 1 JGI ISS
UniRef100_A8TVQ9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Beta-glucosidase G3 n=1 Tax=Medicago truncatula RepID=A8TVQ9_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233D88BUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233D88B related cluster n=1 Tax=unknown RepID=UPI000233D88B SoyBaseE_val: 0ISS

Expression Patterns of Glyma12g05821
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g05821 not represented in the dataset
Glyma12g05821 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g05821 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g054400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g05821
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g05821
>Glyma12g05821.1   sequence type=CDS   gene model=Glyma12g05821   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTGAATTTGAGCATGTTACCATTGCTCTGCGTTTTGTCTCTTTTTGTTACCTCGGCCATCACAATTACTCTTTCCAAGAGCGTTGCACCCATTCATGACGTTTCTTATCTCAACCGGAGCAGTTTCCCGCAAGGCTTTATTTTCGGGTCAGCATCCTCAGCATATCAGTATGAAGGTGCTGCAAGGGAAGGTGGAAAAGGACCGAGTATATGGGATACTTTCACTCATAAATACCCAGAAAAAATAAAAGATGGAAGTAATGGAGATGTAGCGGACGACTCATATCATCGGTATAAGGAGGATATTGGAATCATGAAGTATATGAATTTGGATGCTTATAGATTTTCCATTTCATGGTCTAGGGTACTACCGAAAGGAAAGCTTAGTGCAGGTGTAAATCATGAAGGAGTAAACTACTACAACAACCTCATCAATGAGCTCATGGCTAATGGTCTGCAACCATATGTGACCCTTTTCCATTGGGACGTTCCCCAAGCCTTAGAGGATGAGTATGGTGGTTTTTTAAGTCCTCACATTGTAGATGATTTTAGGGACTATGCTGAACTTTGCTTCAAGGAATTTGGCAATAGGGTGAAACATTGGATTACTTTGAATGAACCGAGGAGTGTGAGCAAGAATGGCTATGCAAATGGCAGGTTTGCACCTGGTCGGTGTTCTGATTGGCTAAAACTGAATTGCACAGGTGGTGATTCCGGAACTGAGCCCTATTTGACTTCGCACAACCAACTTCTTGCTCATGCTGCAGCAGCCAAACTGTATAAGACCAAGTATCAGACATCTCAAAAGGGTTTAATAGGGATTACCTTGAATTCTGACTGGTATGTGCCGGTTTCTAAAGAGAAATCTGATCAAGACGCTGCACGTAGGGGCCTTGACTTCATGTTTGGATGGTATATGGACCCACTCACAAAAGGTGAGTATCCAAAAACCATGCGATCTATGTTGGGAAACCGGCTACCAGAGTTCTCCAAAGAAGAAGCCAGGCAACTAAAAGGATCATTTGATTTTCTGGGCCTAAACTACTACTCATCCTTTTATGCTGCCCATGCACCCCACCAACGTGGTGCCAGACCAACCTTACAAACTGATGCTCTTGTTAATGTTACAAATCACCATGACGGCAAGCCCCTTGGTCCAATGGCTGCTTCTAACTGGTTGTGCATTTATCCACGAGGATTCCGGCAACTGTTGCTTTTCATCAAGAAGCAATACAACAACCCCTTAATTTACATTACTGAAAATGGTTATGACGAGTTCAACGATCCAACACTATCACTTGAAGAAAGCCTTTTAGATACTTACAGAGTCGATTACTTATATCGTCATCTTTATTATCTTCAAACTGCAATCAAGGATGGCGTGAATGTAAAGGGATATTTTGTATGGTCATTGCTGGATAATTTGGAGTGGAACTCTGGCTATACTGTGCGATTTGGACTCGTCTTCGTGAATTTCAGGGATGGCTTGAAAAGATACCCAAAACTCTCGGCACATTGGTTCAAGAATTTCCTCACTAAATCTTAG
Predicted protein sequences of Glyma12g05821
>Glyma12g05821.1   sequence type=predicted peptide   gene model=Glyma12g05821   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALNLSMLPLLCVLSLFVTSAITITLSKSVAPIHDVSYLNRSSFPQGFIFGSASSAYQYEGAAREGGKGPSIWDTFTHKYPEKIKDGSNGDVADDSYHRYKEDIGIMKYMNLDAYRFSISWSRVLPKGKLSAGVNHEGVNYYNNLINELMANGLQPYVTLFHWDVPQALEDEYGGFLSPHIVDDFRDYAELCFKEFGNRVKHWITLNEPRSVSKNGYANGRFAPGRCSDWLKLNCTGGDSGTEPYLTSHNQLLAHAAAAKLYKTKYQTSQKGLIGITLNSDWYVPVSKEKSDQDAARRGLDFMFGWYMDPLTKGEYPKTMRSMLGNRLPEFSKEEARQLKGSFDFLGLNYYSSFYAAHAPHQRGARPTLQTDALVNVTNHHDGKPLGPMAASNWLCIYPRGFRQLLLFIKKQYNNPLIYITENGYDEFNDPTLSLEESLLDTYRVDYLYRHLYYLQTAIKDGVNVKGYFVWSLLDNLEWNSGYTVRFGLVFVNFRDGLKRYPKLSAHWFKNFLTKS*






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