SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G44640 | AT | Annotation by Michelle Graham. TAIR10: beta glucosidase 13 | chr5:18011146-18012669 FORWARD LENGTH=507 | SoyBase | E_val: 0 | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004553 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds | SoyBase | N/A | ISS |
| GO:0043169 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cation binding | SoyBase | N/A | ISS |
| KOG0626 | KOG | Beta-glucosidase, lactase phlorizinhydrolase, and related proteins | JGI | ISS | |
| PTHR10353 | Panther | GLYCOSIDE HYDROLASES | JGI | ISS | |
| PF00232 | PFAM | Glycosyl hydrolase family 1 | JGI | ISS | |
| UniRef100_A8TVQ5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Beta-glucosidase G2 n=1 Tax=Medicago truncatula RepID=A8TVQ5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LQF9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LQF9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g05780 not represented in the dataset |
Glyma12g05780 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g13780 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g053900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g05780.2 sequence type=transcript gene model=Glyma12g05780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGGAAGAACAAGAAACATATTCGTGGAAAACGTGAAGGTTGGAACAAGTTTTCCTCTATAAAAAGGAACGCATTAATTTGCTGAGAAACATGAAATTAATGCAAATAAGCAGATATGGCACATAACGGACATGTACTTGTACTTCTCATTGCTCTTGTTACCTCATTCATTATTATCACAGAAGGCGTTACTACCCCTAATCCTGAAATAGCATCTCTGAATCGGAATAGTTTCCCAACTGGCTTCATCTTTGGCACAGCATCCTCGGCATATCAAGTACACACATTCACCAAATGATTTATGATTGAATAATAATTTACAATTATTGTATAACATCTTTGTATAATTTTTTTTCTCATATATATATTACCTACGTACATGCATGACATAATAAGTTAAAATGTTAAAATGTTTTTAGTTTTTTTCTTACTTTTTCTTAATGCAGTTTTTTTCTTACTTTATTTTGTGGTGTTCATGATTATGTATTATGCAGTACGAAGGTGCAGCAAATGAGGGTGGTAGAGGACCAAGTATTTGGGATACCTTCACCCATAAATATCCAGATAAGATAAAGGATAGAGACAGTGGAGATGTAGCCATTGATTCATATCATCGCTACAAGGAAGATGTTGGGATTATGAAGGATATGAATTTGGATGCTTACAGATTTTCCATATCTTGGTCTAGAATACTCCCGAAAGGAAAGCTAAGTGGAGGTATAAATCAAGAAGGAATTGACTATTACAACAACCTTATCAATGAGCTACTAGCAAATGGTCTGAAACCATTTGTGACTCTTTTCCATTGGGATCTTCCCCAATCGTTAGAAGATGAGTATGGTGGCTTCTTAAGCCCTCGCATTGTGAAAGATTTTCAAGACTATGCAGACCTTTGCTTCAAAGAATTTGGAGATAGAGTAAAACATTGGATAACTTTGAATGAGCCATGGAGTTATAGCCAACATGGTTATGCAACAGGGGAAATGGCTCCTGGTCGATGTTCTGCTTGGATGAATCCTAATTGCAATGGTGGTGATTCTGCAACAGAACCTTATTTGGTCTCGCATCACCAACTTCTTGCTCATGCAGCAAGTGTTCATGTGTACAAGACCAAGTATCAGACATTTCAAAATGGTCTGATAGGCATAACCTTGAATGTTAATTGGTACGTGCCGTTCTCGGATAACAAACTTGATCACAAGGCTACTGAACGAGCTATTGACTTCCAGTATGGATGGTTTATGGATCCACTAACAACGGGAGATTATCCAAAAAGCATGCGATTCTTAGTGAGAGCACGATTACCAAAGTTTACAAAAGAGCAATCCAAATTACTTATTGATTCTTTTGATTTTATTGGCATCAACTACTATTCCGCTTCTTATGCCTCAGATGCACCTCAACTAAGCAATGCCAAAATCAGCTACCTAACAGATTCCCTTTCTAATTCCTCATTTGTACGTGATGGAAAACCCATTGGTCTAAACGTTGCTTCAAATTGGTTGTACGTTTATCCAAGAGGATTTCGAGACGTTTTGTTATACACTAAAAAGAAATACAACAATCCTTTAATTTATATTACAGAAAATGGTATAAATGAGTATGATGATTCATCATTATCACTTGAAGAATCTCTTCTTGATATTTATAGAATCGATTATCATTATCGTCATCTCTTTTATCTTCAAGAAGCAATCAAGAATGGTGTGAATGTAAAAGGGTATTTCGCATGGTCTTTGCTGGACAATTTCGAATGGCACTTAGGTTATACTGTGCGATTTGGAATGAATTTTATAGATTACAAAAATGACTTAAAAAGATACTCAAAACTTTCTGCATTATGGTTCAAGGATTTTCTCAAAATTGAAATCAAACTTGAGGAAGATTCCATGTAATAGTACTACTGTATGAGATTCCTTAAACAATCATATTTGTAAATATATATAGTTTAGGTTTATTTAATTCTTTGGCTATTTCTTATGAATTTGTAGTTCTTATAATTATTCTTGTGAATTTATTGTTCTTGTAATTTGAAATCTATACGTGGAAGCTTGTTTTAAAGATGTGCTGAAATATATTAAGGTCAAGCAATCCTAAGAATGTAATATCTCTTAATTTTGTGAAAATAAAAAATATTTATTATGGGAATGATTTAAAAG
>Glyma12g05780.1 sequence type=CDS gene model=Glyma12g05780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACATAACGGACATGTACTTGTACTTCTCATTGCTCTTGTTACCTCATTCATTATTATCACAGAAGGCGTTACTACCCCTAATCCTGAAATAGCATCTCTGAATCGGAATAGTTTCCCAACTGGCTTCATCTTTGGCACAGCATCCTCGGCATATCAATACGAAGGTGCAGCAAATGAGGGTGGTAGAGGACCAAGTATTTGGGATACCTTCACCCATAAATATCCAGATAAGATAAAGGATAGAGACAGTGGAGATGTAGCCATTGATTCATATCATCGCTACAAGGAAGATGTTGGGATTATGAAGGATATGAATTTGGATGCTTACAGATTTTCCATATCTTGGTCTAGAATACTCCCGAAAGGAAAGCTAAGTGGAGGTATAAATCAAGAAGGAATTGACTATTACAACAACCTTATCAATGAGCTACTAGCAAATGGTCTGAAACCATTTGTGACTCTTTTCCATTGGGATCTTCCCCAATCGTTAGAAGATGAGTATGGTGGCTTCTTAAGCCCTCGCATTGTGAAAGATTTTCAAGACTATGCAGACCTTTGCTTCAAAGAATTTGGAGATAGAGTAAAACATTGGATAACTTTGAATGAGCCATGGAGTTATAGCCAACATGGTTATGCAACAGGGGAAATGGCTCCTGGTCGATGTTCTGCTTGGATGAATCCTAATTGCAATGGTGGTGATTCTGCAACAGAACCTTATTTGGTCTCGCATCACCAACTTCTTGCTCATGCAGCAAGTGTTCATGTGTACAAGACCAAGTATCAGACATTTCAAAATGGTCTGATAGGCATAACCTTGAATGTTAATTGGTACGTGCCGTTCTCGGATAACAAACTTGATCACAAGGCTACTGAACGAGCTATTGACTTCCAGTATGGATGGTTTATGGATCCACTAACAACGGGAGATTATCCAAAAAGCATGCGATTCTTAGTGAGAGCACGATTACCAAAGTTTACAAAAGAGCAATCCAAATTACTTATTGATTCTTTTGATTTTATTGGCATCAACTACTATTCCGCTTCTTATGCCTCAGATGCACCTCAACTAAGCAATGCCAAAATCAGCTACCTAACAGATTCCCTTTCTAATTCCTCATTTGTACGTGATGGAAAACCCATTGGTCTAAACGTTGCTTCAAATTGGTTGTACGTTTATCCAAGAGGATTTCGAGACGTTTTGTTATACACTAAAAAGAAATACAACAATCCTTTAATTTATATTACAGAAAATGGTATAAATGAGTATGATGATTCATCATTATCACTTGAAGAATCTCTTCTTGATATTTATAGAATCGATTATCATTATCGTCATCTCTTTTATCTTCAAGAAGCAATCAAGAATGGTGTGAATGTAAAAGGGTATTTCGCATGGTCTTTGCTGGACAATTTCGAATGGCACTTAGGTTATACTGTGCGATTTGGAATGAATTTTATAGATTACAAAAATGACTTAAAAAGATACTCAAAACTTTCTGCATTATGGTTCAAGGATTTTCTCAAAATTGAAATCAAACTTGAGGAAGATTCCATGTAA >Glyma12g05780.2 sequence type=CDS gene model=Glyma12g05780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGTACGAAGGTGCAGCAAATGAGGGTGGTAGAGGACCAAGTATTTGGGATACCTTCACCCATAAATATCCAGATAAGATAAAGGATAGAGACAGTGGAGATGTAGCCATTGATTCATATCATCGCTACAAGGAAGATGTTGGGATTATGAAGGATATGAATTTGGATGCTTACAGATTTTCCATATCTTGGTCTAGAATACTCCCGAAAGGAAAGCTAAGTGGAGGTATAAATCAAGAAGGAATTGACTATTACAACAACCTTATCAATGAGCTACTAGCAAATGGTCTGAAACCATTTGTGACTCTTTTCCATTGGGATCTTCCCCAATCGTTAGAAGATGAGTATGGTGGCTTCTTAAGCCCTCGCATTGTGAAAGATTTTCAAGACTATGCAGACCTTTGCTTCAAAGAATTTGGAGATAGAGTAAAACATTGGATAACTTTGAATGAGCCATGGAGTTATAGCCAACATGGTTATGCAACAGGGGAAATGGCTCCTGGTCGATGTTCTGCTTGGATGAATCCTAATTGCAATGGTGGTGATTCTGCAACAGAACCTTATTTGGTCTCGCATCACCAACTTCTTGCTCATGCAGCAAGTGTTCATGTGTACAAGACCAAGTATCAGACATTTCAAAATGGTCTGATAGGCATAACCTTGAATGTTAATTGGTACGTGCCGTTCTCGGATAACAAACTTGATCACAAGGCTACTGAACGAGCTATTGACTTCCAGTATGGATGGTTTATGGATCCACTAACAACGGGAGATTATCCAAAAAGCATGCGATTCTTAGTGAGAGCACGATTACCAAAGTTTACAAAAGAGCAATCCAAATTACTTATTGATTCTTTTGATTTTATTGGCATCAACTACTATTCCGCTTCTTATGCCTCAGATGCACCTCAACTAAGCAATGCCAAAATCAGCTACCTAACAGATTCCCTTTCTAATTCCTCATTTGTACGTGATGGAAAACCCATTGGTCTAAACGTTGCTTCAAATTGGTTGTACGTTTATCCAAGAGGATTTCGAGACGTTTTGTTATACACTAAAAAGAAATACAACAATCCTTTAATTTATATTACAGAAAATGGTATAAATGAGTATGATGATTCATCATTATCACTTGAAGAATCTCTTCTTGATATTTATAGAATCGATTATCATTATCGTCATCTCTTTTATCTTCAAGAAGCAATCAAGAATGGTGTGAATGTAAAAGGGTATTTCGCATGGTCTTTGCTGGACAATTTCGAATGGCACTTAGGTTATACTGTGCGATTTGGAATGAATTTTATAGATTACAAAAATGACTTAAAAAGATACTCAAAACTTTCTGCATTATGGTTCAAGGATTTTCTCAAAATTGAAATCAAACTTGAGGAAGATTCCATGTAA
>Glyma12g05780.1 sequence type=predicted peptide gene model=Glyma12g05780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAHNGHVLVLLIALVTSFIIITEGVTTPNPEIASLNRNSFPTGFIFGTASSAYQYEGAANEGGRGPSIWDTFTHKYPDKIKDRDSGDVAIDSYHRYKEDVGIMKDMNLDAYRFSISWSRILPKGKLSGGINQEGIDYYNNLINELLANGLKPFVTLFHWDLPQSLEDEYGGFLSPRIVKDFQDYADLCFKEFGDRVKHWITLNEPWSYSQHGYATGEMAPGRCSAWMNPNCNGGDSATEPYLVSHHQLLAHAASVHVYKTKYQTFQNGLIGITLNVNWYVPFSDNKLDHKATERAIDFQYGWFMDPLTTGDYPKSMRFLVRARLPKFTKEQSKLLIDSFDFIGINYYSASYASDAPQLSNAKISYLTDSLSNSSFVRDGKPIGLNVASNWLYVYPRGFRDVLLYTKKKYNNPLIYITENGINEYDDSSLSLEESLLDIYRIDYHYRHLFYLQEAIKNGVNVKGYFAWSLLDNFEWHLGYTVRFGMNFIDYKNDLKRYSKLSALWFKDFLKIEIKLEEDSM* >Glyma12g05780.2 sequence type=predicted peptide gene model=Glyma12g05780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQYEGAANEGGRGPSIWDTFTHKYPDKIKDRDSGDVAIDSYHRYKEDVGIMKDMNLDAYRFSISWSRILPKGKLSGGINQEGIDYYNNLINELLANGLKPFVTLFHWDLPQSLEDEYGGFLSPRIVKDFQDYADLCFKEFGDRVKHWITLNEPWSYSQHGYATGEMAPGRCSAWMNPNCNGGDSATEPYLVSHHQLLAHAASVHVYKTKYQTFQNGLIGITLNVNWYVPFSDNKLDHKATERAIDFQYGWFMDPLTTGDYPKSMRFLVRARLPKFTKEQSKLLIDSFDFIGINYYSASYASDAPQLSNAKISYLTDSLSNSSFVRDGKPIGLNVASNWLYVYPRGFRDVLLYTKKKYNNPLIYITENGINEYDDSSLSLEESLLDIYRIDYHYRHLFYLQEAIKNGVNVKGYFAWSLLDNFEWHLGYTVRFGMNFIDYKNDLKRYSKLSALWFKDFLKIEIKLEEDSM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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