SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G31440 | AT | Annotation by Michelle Graham. TAIR10: INVOLVED IN: positive regulation of catalytic activity, protein processing; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aph-1 (InterPro:IPR009294); Has 268 Blast hits to 262 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 212; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). | chr2:13399309-13400971 REVERSE LENGTH=250 | SoyBase | E_val: 7.00E-136 | ISS |
| GO:0016485 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein processing | SoyBase | N/A | ISS |
| GO:0043085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| KOG3972 | KOG | Predicted membrane protein | JGI | ISS | |
| PTHR12889 | Panther | GAMMA-SECRETASE SUBUNIT APH-1 | JGI | ISS | |
| PF06105 | PFAM | Aph-1 protein | JGI | ISS | |
| UniRef100_D7LDL2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LDL2_ARALL | SoyBase | E_val: 2.00E-133 | ISS |
| UniRef100_I1LQF1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LQF1_SOYBN | SoyBase | E_val: 1.00E-176 | ISS |
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Glyma12g05710 not represented in the dataset |
Glyma12g05710 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g13720 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g053200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g05710.1 sequence type=CDS gene model=Glyma12g05710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACGGTAGCAGCAGGAATGGGTTACGCTCTGCTAGCGTTAGGACCCTCTCTCTCCATCTTCGTTTCTGTCATTTCCAAAAAACCCTTCCTCATTCTCACCGTTCTCTCCAGCACACTGCTGTGGCTTATAAGTTTGATTGTGCTGTCTGGAATATGGAGGGGGGTTTTGCCTCTCAACACAACAGCTTGGTGGCCTTTTGGAATACTCATTTTCTCATCTGTTGCTTTTCAAGAAGCCCTCAGGCTTTTCTCCTGGAAAATATATAAGAGGTTACAAGATATGTTAGATGCCTTTGCTGATAGAATATCAAAACCACATCTTCACCTGACAGATAAGATGCTGATTGCTCTGGCTGGTGGGTTGGGTCATGGTGTTGCCCATGCTGTGTTCTTCTGCATCAGCCTATTAACTCCTGCATTTGGTCCAGCAACATATTTCGTTGACAGGTGTTCAAAAGTTCCATTTTTCCTTCTTTCTGCGATTATTGCTCTTGCATTTGTCACAATCCACACTTTCTCAATGGTCATCGCATTTAATGGGTACTCAGAGGGGAACAAAGTGGATCAATATTTTGTTCCCATTGTTCACGTTGTCGCTGGAATGGTGACTCTGGTGAATTTGGCCCCTGGCGGTTGTGCTGTTGGCATTCCTCTTCTTTATTTGGTTGCAATCTTGACCTTGATTCATTGTGGGAGGATGGTTTGGAGAAAATTGACAGAAAACCCAATCAGGCTGGTTCACTCGTAG
>Glyma12g05710.1 sequence type=predicted peptide gene model=Glyma12g05710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTVAAGMGYALLALGPSLSIFVSVISKKPFLILTVLSSTLLWLISLIVLSGIWRGVLPLNTTAWWPFGILIFSSVAFQEALRLFSWKIYKRLQDMLDAFADRISKPHLHLTDKMLIALAGGLGHGVAHAVFFCISLLTPAFGPATYFVDRCSKVPFFLLSAIIALAFVTIHTFSMVIAFNGYSEGNKVDQYFVPIVHVVAGMVTLVNLAPGGCAVGIPLLYLVAILTLIHCGRMVWRKLTENPIRLVHS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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