SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G59410 | AT | Annotation by Michelle Graham. TAIR10: protein kinase family protein | chr3:21950575-21959151 FORWARD LENGTH=1241 | SoyBase | E_val: 0 | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0006521 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cellular amino acid metabolic process | SoyBase | N/A | ISS |
| GO:0018105 | GO-bp | Annotation by Michelle Graham. GO Biological Process: peptidyl-serine phosphorylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0000049 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: tRNA binding | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004694 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: eukaryotic translation initiation factor 2alpha kinase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG1035 | KOG | eIF-2alpha kinase GCN2 | JGI | ISS | |
| PTHR11042 | Panther | EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE (EIF2-ALPHA KINASE)-RELATED | JGI | ISS | |
| PTHR11042:SF9 | Panther | WEE1 PROTEIN KINASE-RELATED | JGI | ISS | |
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| PF03129 | PFAM | Anticodon binding domain | JGI | ISS | |
| PF05773 | PFAM | RWD domain | JGI | ISS | |
| UniRef100_B9T5C5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Eif2alpha kinase, putative n=1 Tax=Ricinus communis RepID=B9T5C5_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D76C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D76C related cluster n=1 Tax=unknown RepID=UPI000233D76C | SoyBase | E_val: 0 | ISS |
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Glyma12g05640 not represented in the dataset |
Glyma12g05640 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g13645 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g052400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g05640.1 sequence type=CDS gene model=Glyma12g05640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGCACAGTTCGAAGAAGAAGAAGCGCGGCGGCGGGAGCGGTCGCCGGAGCAAGGGGAGAACGCAGTCCAAAGACCACGCTTCTCAATTCGGCTCTGACGATTACGACCAGCTCTCCGAAGAGATTACCGCATTATGCGCAATTTTCGAAGAAGACTGCAAGGTTCTTCCAGGATCGCCTCCTCGAGTAGTTATTAAGCTCAGGCCTTACTCGAAGGACATGGGTTATGAGGACCTAGACGTTTCTGCTGTTCTTGCTGTCAGGTGCTTGCCTGGGTATCCCTTCAAGTGCCCCAAGTTGCAGATTACTCCGGAGAAAGGGTTATCAGAAGCTGATGCTAAAAAGCTTTTGTCTCTCCTCCAAGATCAGGCTACTTTAAATGCTAGGGAGGGACGAGTAATGATCTATAATTTGGTAGAGGCTGCTCAAGAATTTCTGTCTGGTATTGAGCCAATTGCCAAAACAAATGATTCTAAGCTTTTACACTCGATGGTGGAAAGCAATGAAGAATTGTTTCCCAAGGATATGACATCTGTAAATAAAAAGGGTTCTTTTGTTTACGGTTTTATAGACCTTTTCAGTGGTTGTGGAGAAACATGGAGTTGGAGTTTTGGAATGGATGAAACTGCAGTAAAAAGTTCTTCTCTTTCTCCATCTAAGTTAGATGCCTCAAAACCACTGGAGAAGAAATCTGATAGTAAGGAAACACCATTAATAATGCAAGAACTTCCTGCCAAATTAGATACTGTTGGAGAAGTTAGTGAAGACAGCAACAATAGTTTATCTTTGACTTCTTCAAGTAGATCTTTGGTGGAGGATTTTGTAGGGAACAAAAATGAAGGTGAGAAAGAGTATTTTATCGTTGATGAGTATACAACAGAACATAATGAAGGTATTAATGAAAGTGAGTCTTCAGAGTCTCTGTCTTCTGAATCCTTGCCTCATCACCAACCCTCTCAAACAGTTGAAAAGGATCTAATAATGGTTCACATGCTTCGCCTTGTTTGTGCTTCTAAGGGAACATTTGCTGACTGTTTGCCACAAGTGGTAACAGAGCTGTGCAATTTAGGTATCATTTCTGACTCAGCACGCGATATGGCATCTGAACCACCTTCCATTTTCAACAAAACCTTCAATCGTGTTTTCCAGAAACACCTGGCTTCATCCAGAATATCTCAATTTTGGAAACCTGATATTGGAGGCTCAAACACAGTTCCCCATGGTTCTCGATATTTGAATGATTTTGAGGAGCTACGACCTCTTGGTCATGGTGGTTTTGGTCATGTTGTATTGTGCAAAAATAAACTTGATGGAAGGCAGTATGCAGTAAAGAAAATTCGCCTCAAGGACAAAAGCATGCCTGACCGAATATTAAGGGAAGTGGCTACACTTTCTCGTTTACAGCATCAACATGTTGTTCGATATTATCAGGCATGGTTTGAAACTGGAGTTTCTGATTCTTATGGTGATTCTACTTGGGGTTCAAAGACTACAGTAAGCTCTACTTTCAGCTATAAAGCTGCAACCTCCAACGATGCCTTGGGGCACGAGAATCAGCTTGAATCAACTTACCTTTATATACAAATGGAGTACTGTCCCAGGACTCTTCGCCAGGTGTTTGAATCATATAATCATTTTGACAAAGAACTGGCCTGGCATTTGTTTCGCCAAATAGTGGAAGGCTTGGCACACATACATGGTCAAGGAATAATTCATCGGGACCTAACACCAAATAACATATTCTTTGATGCTCGCAATGATATTAAAATTGGTGATTTTGGTCTTGCCAAGTTCTTGAAGTTGGAGCAGCTGGATCAAGATCTGGGTCATCCTGCTGATGCAACAGGAGTTTCCATTGATGGCACTGGACAAGTGGGGACATATTTCTATACAGCTCCTGAAATTGAGCAAGGATGGCCCAAGATTGATGAAAAGGCTGATATGTACAGCTTAGGAGTGGTTTTCTTTGAGCTTTGGCACCCATTTGGGACAGGGATGGAGAGACATGTTATTTTATCTGATCTTAAACAGAAACGGGAAGTTCCACATACTTGGGTTGTTGAGTTTCCAGAACAGGAATCCTTGCTGCGACAGTTAATGTCTCCAGCTCCTTCAGATCGCCCTTCTGCCACAGAACTTCTGCAAAATGCATTTCCTCAACGAATGGAGTCTGAATTATTGGATGATATTCTACGAACAATGCAGAAATCAGAGGATACAAGCATATATGATAAAGTTTTAAATGCTATCTTTGACGAAGAGATGTTAAGCACAAAACACATTCGCCAGAACAGTTCATCCATTCAGTACACTGACTTCGAAACTGAGGTGCGAGATTATGTTGTAGATGCGAACAGGGAAATTTTCCGACAGCATTGTGCAAAGCACCTAGAAATACCTACAATGCGATTATTGGATGATTGTCCACAGTTTAATAGAAATGCAGTTAAACTTCTGACCCATGGAGGAGACATGCTTGAACTTTGCCACGAGTTGCGTTTGCCTTTTGTGAACTGGATTATTTCTAACCAGAAATCTTCATTCAAACGATATGAGATATCATGTGTCTTCAGAAGAGCAATTGGACATTCATCACCAAACCACTACCTTCAGGGAGATTTTGACATTATTGGTGGTACCTCAGCATTGACAGAAGCAGAGGTCATAAAGGTCACAAGGGACATAGTCACTTGTTTTTTCCATGAAGATTCATGTGACATTCATCTCAACCATGGTGACCTTCTGGATGCAATTTGGTCATGGATTGGAGTAAAGGTAGAACACAGACTCAAAGTAGCAGAGCTTCTTTCAATGATGGGTTCTTTGCGCCCACAATCCTCGGAAAGGAAATCAAAATGGGTTGTGATAAGGCGGCAGCTTTTGCAGGAACTGAATTTAGCAGAGGCTATGGTAAACAGGTTACAGACTGTAGGTTTAAGATTCTGTGGATCTGCTGATCAGGCACTCCCCCGACTCAGAGGAGCTCTTCCATCTGATAAACGTGCATTCAAGGCACTTGATGAATTGTCTGAGCTTGTGAGTCTCCTGAGAATTTGGAGGATTGACAAAAATATCTATATAGATGCATTAATGCCACCAACTGAAAGTTATCATAGAGATTTGTTTTTTCAGGTATACTTAAGGAAGGAGAACAGTCCTGGATCTCTCTCTGAAGGTGCCTTGCTGGCTGTTGGTGGTCGATATGACTATTTGTTTCATCAGTTGTGGAGTAGTGACTATAAAGGAAATCCTCCCACTGGTGTGGGAACTAGCCTTGCACTGGAGACAATAATTCAGAATTGTCCTGTAGATTTCAAGCCCAATAGAAACGAAGCCAGCATCAATATTCTTGTTTGTTCTAGAGGAGGAGGTGGTCTTCTGGTGGAGCGCATGGAGCTAGTTGCTGAATTATGGGAGGAGAACTTTAAGGCTGAATTTGTTCCTACACCTGATCCCAGTCTTACAGAGCAGTATGAGTATGCTAATGAACATGGTATCAAATGTCTTGTCATCATCACAGATACAGATTTCTCCTTGACAGGTTCTGTTAAGGTTCGACACCTTGAACATAAGAGGGAGAAAAATGTTGAGAAGAAAAACCTAGTCAAATTTCTATCGGATGCTATGGCAACACAATTTAGAAATCCCTCCATTTGGATTTGA
>Glyma12g05640.1 sequence type=predicted peptide gene model=Glyma12g05640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGHSSKKKKRGGGSGRRSKGRTQSKDHASQFGSDDYDQLSEEITALCAIFEEDCKVLPGSPPRVVIKLRPYSKDMGYEDLDVSAVLAVRCLPGYPFKCPKLQITPEKGLSEADAKKLLSLLQDQATLNAREGRVMIYNLVEAAQEFLSGIEPIAKTNDSKLLHSMVESNEELFPKDMTSVNKKGSFVYGFIDLFSGCGETWSWSFGMDETAVKSSSLSPSKLDASKPLEKKSDSKETPLIMQELPAKLDTVGEVSEDSNNSLSLTSSSRSLVEDFVGNKNEGEKEYFIVDEYTTEHNEGINESESSESLSSESLPHHQPSQTVEKDLIMVHMLRLVCASKGTFADCLPQVVTELCNLGIISDSARDMASEPPSIFNKTFNRVFQKHLASSRISQFWKPDIGGSNTVPHGSRYLNDFEELRPLGHGGFGHVVLCKNKLDGRQYAVKKIRLKDKSMPDRILREVATLSRLQHQHVVRYYQAWFETGVSDSYGDSTWGSKTTVSSTFSYKAATSNDALGHENQLESTYLYIQMEYCPRTLRQVFESYNHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDLGHPADATGVSIDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGVVFFELWHPFGTGMERHVILSDLKQKREVPHTWVVEFPEQESLLRQLMSPAPSDRPSATELLQNAFPQRMESELLDDILRTMQKSEDTSIYDKVLNAIFDEEMLSTKHIRQNSSSIQYTDFETEVRDYVVDANREIFRQHCAKHLEIPTMRLLDDCPQFNRNAVKLLTHGGDMLELCHELRLPFVNWIISNQKSSFKRYEISCVFRRAIGHSSPNHYLQGDFDIIGGTSALTEAEVIKVTRDIVTCFFHEDSCDIHLNHGDLLDAIWSWIGVKVEHRLKVAELLSMMGSLRPQSSERKSKWVVIRRQLLQELNLAEAMVNRLQTVGLRFCGSADQALPRLRGALPSDKRAFKALDELSELVSLLRIWRIDKNIYIDALMPPTESYHRDLFFQVYLRKENSPGSLSEGALLAVGGRYDYLFHQLWSSDYKGNPPTGVGTSLALETIIQNCPVDFKPNRNEASINILVCSRGGGGLLVERMELVAELWEENFKAEFVPTPDPSLTEQYEYANEHGIKCLVIITDTDFSLTGSVKVRHLEHKREKNVEKKNLVKFLSDAMATQFRNPSIWI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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