SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G28480 | AT | Annotation by Michelle Graham. TAIR10: RNA-binding CRS1 / YhbY (CRM) domain protein | chr2:12176642-12178031 REVERSE LENGTH=372 | SoyBase | E_val: 5.00E-138 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| PF01985 | PFAM | CRS1 / YhbY (CRM) domain | JGI | ISS | |
| UniRef100_Q5JK62 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Group II intron splicing factor CRS1-like n=1 Tax=Oryza sativa Japonica Group RepID=Q5JK62_ORYSJ | SoyBase | E_val: 6.00E-127 | ISS |
| UniRef100_UPI000233D769 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D769 related cluster n=1 Tax=unknown RepID=UPI000233D769 | SoyBase | E_val: 0 | ISS |
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Glyma12g05590 not represented in the dataset |
Glyma12g05590 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g13600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g051900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g05590.2 sequence type=transcript gene model=Glyma12g05590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAACTATATAACACAACAACACAAAAAACATTCTTCTTCAACAATGGCAACTTCGTTATTCCGCAGCATAAGGAGAGCTTTCTTTGCTCTCAGATTCTCGTACTCTACCTCGTTTTCGGTCTCTCCCAGTTGTTGGGAGGACTCAGATGTGTGTTTGTTCTCCGTTGAGGCACTGTGTCCCGGTGGGAGAGCAAGGTTATTGGTGGGGTTTGAGAAATTTGAGCTATGGCAGGGTGAACCTTGTGATAACGGGAGGGAAGACCAAGTTTGAGACTCATGAGGAAGAGCCTCCGAAGAAGGACAAGTGGACGACAAAGAAGAGGTTGAAGATGCAGAGGAAGAGAGAGAAGGAGAAGAGGAGAGCGGCCAACAGGAAGGACCCCCGTCAACTCGGCATCAAAGGGAAGAAGAAGAAGCAGAGATTTGCCTGTGCAGAAGAGAGAATCAAGTACAAGATTGAAAAAGCCAGAATTAAGGAAGCATTGCTCATTGAAAGGCTCAAACGATATGAAGTTCCTAAAGCTCAGGGTCCTGTTGTAAAGCCTGATGACTTGACGGGGGAGGAACGATTTTATTTGAAGAAAATGGCTCAGAAGAGATCTAATTATCTACAAATTGGCAGAAGAGGATTATTTGGAGGGGTTGTTCTCAATATGCATATGCATTGGAAGAAACATGAGACTGTTAAGGTCTTTTGCAAGCCTTGTAAACCTGGTCAAGTACATGAGTATGCACAAGAACTTGCCAGATTGAGTGGTGGTATTCCACTTCAAATAATTGGAGATGACACTATAATATTTTATCGCGGAAAGAACTATGAACAGCCTGAGGTTATGTCACCAATTGATACCCTGTCCAAGAAAAAGGCACTTGAAAAATCCAAGTATGAGCAATCACTTGAGTCAGTGAGGCGCTTCATTGCTATCGCTGAGAAAGAATTAGAGCTATATTGTAGGCACGTTGCACTCTATGGTGATCCAAACAACCGAAATCCCTTATCAATGATGGACGGCCCAAGTGGAAACTCAAAGGAAAAAGGTAATCATGGAATTAGTGATGATTTTTCAGTCAGTCTTTCAGAGACTGAAGCAGACTCCACGGAAATGGAGCTATCAGAAATAGAAGATAGTCTTGAAGATGAAAACATGTCAATGAATGAATCAGATTCTGAAGAGGACAGCATGTTGGATTCCAATGGTAATCAAGAAAGAGAGGTATATTTTACTAAAATTCAAGATGAAAGTGTAAGCTCGACCACAGGTTCTTGTTCTTCATCAGTGTCTGAAGATAGCCACTATTATAATAAGCAATACTTATAACAAGTTCTATTCACTATAGATTAAATATATTTTGTTAACAGTTACCTTGAGTAAATCAATACCTCGGAGGAATTTGAAAAATATATTGAGCGAAGTATTATCCTGTTTTACCTGGGACTAATTTCTGTTAGGCCTTTATTTAAGAAATTCAAGTTAAGTTCTACTCAAACCAACGACATATTGGTAAACACTAAC
>Glyma12g05590.1 sequence type=CDS gene model=Glyma12g05590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAACTTCGTTATTCCGCAGCATAAGGAGAGCTTTCTTTGCTCTCAGATTCTCGTACTCTACCTCGTTTTCGGTCTCTCCCAGGTCAGTTGTTGGGAGGACTCAGATGTGTGTTTGTTCTCCGTTGAGGCACTGTGTCCCGGTGGGAGAGCAAGGTTATTGGTGGGGTTTGAGAAATTTGAGCTATGGCAGGGTGAACCTTGTGATAACGGGAGGGAAGACCAAGTTTGAGACTCATGAGGAAGAGCCTCCGAAGAAGGACAAGTGGACGACAAAGAAGAGGTTGAAGATGCAGAGGAAGAGAGAGAAGGAGAAGAGGAGAGCGGCCAACAGGAAGGACCCCCGTCAACTCGGCATCAAAGGGAAGAAGAAGAAGCAGAGATTTGCCTGTGCAGAAGAGAGAATCAAGTACAAGATTGAAAAAGCCAGAATTAAGGAAGCATTGCTCATTGAAAGGCTCAAACGATATGAAGTTCCTAAAGCTCAGGGTCCTGTTGTAAAGCCTGATGACTTGACGGGGGAGGAACGATTTTATTTGAAGAAAATGGCTCAGAAGAGATCTAATTATCTACAAATTGGCAGAAGAGGATTATTTGGAGGGGTTGTTCTCAATATGCATATGCATTGGAAGAAACATGAGACTGTTAAGGTCTTTTGCAAGCCTTGTAAACCTGGTCAAGTACATGAGTATGCACAAGAACTTGCCAGATTGAGTGGTGGTATTCCACTTCAAATAATTGGAGATGACACTATAATATTTTATCGCGGAAAGAACTATGAACAGCCTGAGGTTATGTCACCAATTGATACCCTGTCCAAGAAAAAGGCACTTGAAAAATCCAAGTATGAGCAATCACTTGAGTCAGTGAGGCGCTTCATTGCTATCGCTGAGAAAGAATTAGAGCTATATTGTAGGCACGTTGCACTCTATGGTGATCCAAACAACCGAAATCCCTTATCAATGATGGACGGCCCAAGTGGAAACTCAAAGGAAAAAGGTAATCATGGAATTAGTGATGATTTTTCAGTCAGTCTTTCAGAGACTGAAGCAGACTCCACGGAAATGGAGCTATCAGAAATAGAAGATAGTCTTGAAGATGAAAACATGTCAATGAATGAATCAGATTCTGAAGAGGACAGCATGTTGGATTCCAATGGTAATCAAGAAAGAGAGGTATATTTTACTAAAATTCAAGATGAAAGTGTAAGCTCGACCACAGGTTCTTGTTCTTCATCAGTGTCTGAAGATAGCCACTATTATAATAAGCAATACTTATAA >Glyma12g05590.2 sequence type=CDS gene model=Glyma12g05590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGTGTTTGTTCTCCGTTGAGGCACTGTGTCCCGGTGGGAGAGCAAGGTTATTGGTGGGGTTTGAGAAATTTGAGCTATGGCAGGGTGAACCTTGTGATAACGGGAGGGAAGACCAAGTTTGAGACTCATGAGGAAGAGCCTCCGAAGAAGGACAAGTGGACGACAAAGAAGAGGTTGAAGATGCAGAGGAAGAGAGAGAAGGAGAAGAGGAGAGCGGCCAACAGGAAGGACCCCCGTCAACTCGGCATCAAAGGGAAGAAGAAGAAGCAGAGATTTGCCTGTGCAGAAGAGAGAATCAAGTACAAGATTGAAAAAGCCAGAATTAAGGAAGCATTGCTCATTGAAAGGCTCAAACGATATGAAGTTCCTAAAGCTCAGGGTCCTGTTGTAAAGCCTGATGACTTGACGGGGGAGGAACGATTTTATTTGAAGAAAATGGCTCAGAAGAGATCTAATTATCTACAAATTGGCAGAAGAGGATTATTTGGAGGGGTTGTTCTCAATATGCATATGCATTGGAAGAAACATGAGACTGTTAAGGTCTTTTGCAAGCCTTGTAAACCTGGTCAAGTACATGAGTATGCACAAGAACTTGCCAGATTGAGTGGTGGTATTCCACTTCAAATAATTGGAGATGACACTATAATATTTTATCGCGGAAAGAACTATGAACAGCCTGAGGTTATGTCACCAATTGATACCCTGTCCAAGAAAAAGGCACTTGAAAAATCCAAGTATGAGCAATCACTTGAGTCAGTGAGGCGCTTCATTGCTATCGCTGAGAAAGAATTAGAGCTATATTGTAGGCACGTTGCACTCTATGGTGATCCAAACAACCGAAATCCCTTATCAATGATGGACGGCCCAAGTGGAAACTCAAAGGAAAAAGGTAATCATGGAATTAGTGATGATTTTTCAGTCAGTCTTTCAGAGACTGAAGCAGACTCCACGGAAATGGAGCTATCAGAAATAGAAGATAGTCTTGAAGATGAAAACATGTCAATGAATGAATCAGATTCTGAAGAGGACAGCATGTTGGATTCCAATGGTAATCAAGAAAGAGAGGTATATTTTACTAAAATTCAAGATGAAAGTGTAAGCTCGACCACAGGTTCTTGTTCTTCATCAGTGTCTGAAGATAGCCACTATTATAATAAGCAATACTTATAA
>Glyma12g05590.1 sequence type=predicted peptide gene model=Glyma12g05590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATSLFRSIRRAFFALRFSYSTSFSVSPRSVVGRTQMCVCSPLRHCVPVGEQGYWWGLRNLSYGRVNLVITGGKTKFETHEEEPPKKDKWTTKKRLKMQRKREKEKRRAANRKDPRQLGIKGKKKKQRFACAEERIKYKIEKARIKEALLIERLKRYEVPKAQGPVVKPDDLTGEERFYLKKMAQKRSNYLQIGRRGLFGGVVLNMHMHWKKHETVKVFCKPCKPGQVHEYAQELARLSGGIPLQIIGDDTIIFYRGKNYEQPEVMSPIDTLSKKKALEKSKYEQSLESVRRFIAIAEKELELYCRHVALYGDPNNRNPLSMMDGPSGNSKEKGNHGISDDFSVSLSETEADSTEMELSEIEDSLEDENMSMNESDSEEDSMLDSNGNQEREVYFTKIQDESVSSTTGSCSSSVSEDSHYYNKQYL* >Glyma12g05590.2 sequence type=predicted peptide gene model=Glyma12g05590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MCVCSPLRHCVPVGEQGYWWGLRNLSYGRVNLVITGGKTKFETHEEEPPKKDKWTTKKRLKMQRKREKEKRRAANRKDPRQLGIKGKKKKQRFACAEERIKYKIEKARIKEALLIERLKRYEVPKAQGPVVKPDDLTGEERFYLKKMAQKRSNYLQIGRRGLFGGVVLNMHMHWKKHETVKVFCKPCKPGQVHEYAQELARLSGGIPLQIIGDDTIIFYRGKNYEQPEVMSPIDTLSKKKALEKSKYEQSLESVRRFIAIAEKELELYCRHVALYGDPNNRNPLSMMDGPSGNSKEKGNHGISDDFSVSLSETEADSTEMELSEIEDSLEDENMSMNESDSEEDSMLDSNGNQEREVYFTKIQDESVSSTTGSCSSSVSEDSHYYNKQYL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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