Glyma12g05550 - SoyBase

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Report for Sequence Feature Glyma12g05550

Feature Type:	gene_model
Chromosome:	Gm12
Start:	3693973
stop:	3696094
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g05550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G59520	AT	Annotation by Michelle Graham. TAIR10: RHOMBOID-like protein 13 \| chr3:21992054-21992863 FORWARD LENGTH=269	SoyBase	E_val: 7.00E-158	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0004252	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity	SoyBase	N/A	ISS
KOG2632	KOG	Rhomboid family proteins	JGI		ISS
PTHR22790	Panther	RHOMBOID-RELATED	JGI		ISS
PTHR22790:SF13	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01694	PFAM	Rhomboid family	JGI		ISS
UniRef100_E5GC88	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Rhomboid protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GC88_CUCME	SoyBase	E_val: 2.00E-171	ISS
UniRef100_I1LQD5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LQD5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g05550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g05550 not represented in the dataset	Glyma12g05550 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g05550

Paralog	Evidence	Comments
Glyma11g13550	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g05550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g051500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g05550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g05550

Limit To All Plant Sequences

>Glyma12g05550.2   sequence type=transcript   gene model=Glyma12g05550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTTAAACAAAAGTTTTAATGCACTATAATTAAAATATAATGTTTTCTATTGGTAGATATTGTAAAGACGATCACTCTATATGGTTAAAAGCTTGACTATAATAATTATCGCATGTGAAATAAAAATGTTATAAAATTCTGTATTTTAACAATAAAAATAAAATAAAATTTTGATGTCTTTTTTACCTGTAAAACAAGGAAAAACATAGTAAATAATATCTATGGCTAAACAAATATATTTCTTTAAATAATGATATATGAACATCTATCTTTTTAAACACTTAACAAATACTTTTTTTTTCTCTATCTTTATCTCCATGTCAAATCATAATACATATTTTTTTCATTTTTTTCTCTCATTAAGTGTTAATTGACATATTAAGTGTCCAATTATAATTTTGTTTTTTCTTTTGAGAAACTAAGTAAATATTTTTTTAAAACCAGCAAATTATAAAAACAATATATTTTCTAGGCATAATTTTTATATAAAAATAAAAAAGGCACCTACCATCATATCATGTAATTTAAGATCATTAATTTGACAAAATGATAGGCAGTTAAAATATGCATATGCTTCAGAAAACGCAGGCGAGCATTCATCCAAACACTCGAATCGTCTCTAGTACCTCAATCAAGCGTTGTTCATGAACTCCCTCAAGTTACAGACACTACCTTTCTGGCTTTGTTCTCGTGCAATCCCTTGAGAAAAGTTTCTGTTCTGTGCTTGGTGACGCATGCGCACTTTTTCATTTGGTGGGTATCGTTAATTTCTAAGATTTCCTAAAAATTGAAAAAAAGAAGAAGAAACCCTTGAATTTGGGAGCGTTGGATTGAATTGACTGTGTTGTGTTGTTTGATTGTAGCATTTAAGAAGGGGTTTTGGGAAATGGGGAAGCCTTTGTTTTATGAGATCTTGGAAAAACCTGCCACAAGTTGCATCATAGGAATATGCAGCATGATTTGGTTCTACATACAGAAGAAAAATATTGGGTATTCACATGTGGGTCTGAGTTATGAGACCGCTGTAGAAGGGCATCATTGGAGGATAATTACTTCTGCTTTTTCTCATATTAGTGTTATTCATCTTGTTTTTAATATGAGTGCACTTTGGAGTCTTGGGGTGGTAGAGCAGCTTGGTCACTTGGGCCTTGGTGTTGAGTACTACTTGCAGTACACACTTGTGTTGGTTGTTCTATCAGGAGTGCTGGTTCTTGCAATGTATCATTTGTTGATTCAAAGGTTCAAGCTTGAGTATTTTCGTCGAGTGACGGCTGTTGGGTATTCCTGTGTTGTTTTTGGGTGGATGACAATTCTTTCTGTGAAGCAACCATCTTCCAAGTTGGATCTCTTTGGTTTTCTTTCTCTTCCTATCAGTTTTGCGCCGTTTGAATCGCTTATTTTCACTTCGATCATTGTTCCTCAGGCGAGTTTTCTTGGCCATTTATCGGGCATTGTTGTTGGATATGCTATAGCATGGGGTTTGATTCATGGGATGAGCAATTACTGGGCACTTTCCTTGTTGGGATGGATTGCGCTTGTCTTTGTTTTGAGTTTGAAGAGATCTGGTGCCGTTGACCTAAACTTTCTTGAGATTGAATCTGTTACAGATCCTTCCCTACCATCTGTGCGGTTTTTGGCATCAAACAGTGGCAGAACACTGCAGATGAGTGCGTTGCCAAATGGAAATGTTGAAATTGTCTAATGTTAAACTGATATATCTTGTGATATCAGATGTTTCCTTGACACACTCAATATTGATAGCAATGTGATTCTAATTCTTCCAATATAGAATTTGTTTAAAGCTTTAGCAATATCCCTTTTCAGAGTTTGCATCTTTAGTTATGTGATAATGAATGTTCTCTGATGTTGTATATCCATTTGTTGAAGTGATACTGCTCGTTGCAAATTTGCTGCTACTTTTTGCCTTTTTGTTTAATTTGTGTGCTAGAATCTGAATCTATTGCTCTCATGGACAATACTTTCATATTAAGATATATTATTACCC

>Glyma12g05550.3   sequence type=transcript   gene model=Glyma12g05550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCATTTTTTTCTCTCATTAAGTGTTAATTGACATATTAAGTGTCCAATTATAATTTTGTTTTTTCTTTTGAGAAACTAAGTAAATATTTTTTTAAAACCAGCAAATTATAAAAACAATATATTTTCTAGGCATAATTTTTATATAAAAATAAAAAAGGCACCTACCATCATATCATGTAATTTAAGATCATTAATTTGACAAAATGATAGGCAGTTAAAATATGCATATGCTTCAGAAAACGCAGGCGAGCATTCATCCAAACACTCGAATCGTCTCTAGTACCTCAATCAAGCGTTGTTCATGAACTCCCTCAAGTTACAGACACTACCTTTCTGGCTTTGTTCTCGTGCAATCCCTTGAGAAAAGTTTCTGTTCTGTGCTTGGTGACGCATGCGCACTTTTTCATTTGCATTTAAGAAGGGGTTTTGGGAAATGGGGAAGCCTTTGTTTTATGAGATCTTGGAAAAACCTGCCACAAGTTGCATCATAGGAATATGCAGCATGATTTGGTTCTACATACAGAAGAAAAATATTGGGTATTCACATGTGGGTCTGAGTTATGAGACCGCTGTAGAAGGGCATCATTGGAGGATAATTACTTCTGCTTTTTCTCATATTAGTGTTATTCATCTTGTTTTTAATATGAGTGCACTTTGGAGTCTTGGGGTGGTAGAGCAGCTTGGTCACTTGGGCCTTGGTGTTGAGTACTACTTGCAGTACACACTTGTGTTGGTTGTTCTATCAGGAGTGCTGGTTCTTGCAATGTATCATTTGTTGATTCAAAGGTTCAAGCTTGAGTATTTTCGTCGAGTGACGGCTGTTGGGTATTCCTGTGTTGTTTTTGGGTGGATGACAATTCTTTCTGTGAAGCAACCATCTTCCAAGTTGGATCTCTTTGGTTTTCTTTCTCTTCCTATCAGTTTTGCGCCGTTTGAATCGCTTATTTTCACTTCGATCATTGTTCCTCAGGCGAGTTTTCTTGGCCATTTATCGGGCATTGTTGTTGGATATGCTATAGCATGGGGTTTGATTCATGGGATGAGCAATTACTGGGCACTTTCCTTGTTGGGATGGATTGCGCTTGTCTTTGTTTTGAGTTTGAAGAGATCTGGTGCCGTTGACCTAAACTTTCTTGAGATTGAATCTGTTACAGATCCTTCCCTACCATCTGTGCGGTTTTTGGCATCAAACAGTGGCAGAACACTGCAGATGAGTGCGTTGCCAAATGGAAATGTTGAAATTGTCTAATGTTAAACTGATATATCTTGTGATATCAGATGTTTCCTTGACACACTCAATATTGATAGCAATGTGATTCTAATTCTTCCAATATAGAATTTGTTTAAAGCTTTAGCAATATCCCTTTTCAGAGTTTGCATCTTTAGTTATGTGATAATGAATGTTCTCTGATGTTGTATATCCATTTGTTGAAGTGATACTGCTCGTTGCAAATTTGCTGCTACTTTTTGCCTTTTTGTTTAATTTGTGTGCTAGAATCTGAATCTATTGCTCTCATGGACAATACTTTCATATTAAGATATATTATTACCC

Coding sequences of Glyma12g05550

Limit To All Plant Sequences

>Glyma12g05550.1   sequence type=CDS   gene model=Glyma12g05550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGCACTTTTTCATTTGCATTTAAGAAGGGGTTTTGGGAAATGGGGAAGCCTTTGTTTTATGAGATCTTGGAAAAACCTGCCACAAGTTGCATCATAGGAATATGCAGCATGATTTGGTTCTACATACAGAAGAAAAATATTGGGTATTCACATGTGGGTCTGAGTTATGAGACCGCTGTAGAAGGGCATCATTGGAGGATAATTACTTCTGCTTTTTCTCATATTAGTGTTATTCATCTTGTTTTTAATATGAGTGCACTTTGGAGTCTTGGGGTGGTAGAGCAGCTTGGTCACTTGGGCCTTGGTGTTGAGTACTACTTGCAGTACACACTTGTGTTGGTTGTTCTATCAGGAGTGCTGGTTCTTGCAATGTATCATTTGTTGATTCAAAGGTTCAAGCTTGAGTATTTTCGTCGAGTGACGGCTGTTGGGTATTCCTGTGTTGTTTTTGGGTGGATGACAATTCTTTCTGTGAAGCAACCATCTTCCAAGTTGGATCTCTTTGGTTTTCTTTCTCTTCCTATCAGTTTTGCGCCGTTTGAATCGCTTATTTTCACTTCGATCATTGTTCCTCAGGCGAGTTTTCTTGGCCATTTATCGGGCATTGTTGTTGGATATGCTATAGCATGGGGTTTGATTCATGGGATGAGCAATTACTGGGCACTTTCCTTGTTGGGATGGATTGCGCTTGTCTTTGTTTTGAGTTTGAAGAGATCTGGTGCCGTTGACCTAAACTTTCTTGAGATTGAATCTGTTACAGATCCTTCCCTACCATCTGTGCGGTTTTTGGCATCAAACAGTGGCAGAACACTGCAGATGAGTGCGTTGCCAAATGGAAATGTTGAAATTGTCTAA

>Glyma12g05550.2   sequence type=CDS   gene model=Glyma12g05550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAGCCTTTGTTTTATGAGATCTTGGAAAAACCTGCCACAAGTTGCATCATAGGAATATGCAGCATGATTTGGTTCTACATACAGAAGAAAAATATTGGGTATTCACATGTGGGTCTGAGTTATGAGACCGCTGTAGAAGGGCATCATTGGAGGATAATTACTTCTGCTTTTTCTCATATTAGTGTTATTCATCTTGTTTTTAATATGAGTGCACTTTGGAGTCTTGGGGTGGTAGAGCAGCTTGGTCACTTGGGCCTTGGTGTTGAGTACTACTTGCAGTACACACTTGTGTTGGTTGTTCTATCAGGAGTGCTGGTTCTTGCAATGTATCATTTGTTGATTCAAAGGTTCAAGCTTGAGTATTTTCGTCGAGTGACGGCTGTTGGGTATTCCTGTGTTGTTTTTGGGTGGATGACAATTCTTTCTGTGAAGCAACCATCTTCCAAGTTGGATCTCTTTGGTTTTCTTTCTCTTCCTATCAGTTTTGCGCCGTTTGAATCGCTTATTTTCACTTCGATCATTGTTCCTCAGGCGAGTTTTCTTGGCCATTTATCGGGCATTGTTGTTGGATATGCTATAGCATGGGGTTTGATTCATGGGATGAGCAATTACTGGGCACTTTCCTTGTTGGGATGGATTGCGCTTGTCTTTGTTTTGAGTTTGAAGAGATCTGGTGCCGTTGACCTAAACTTTCTTGAGATTGAATCTGTTACAGATCCTTCCCTACCATCTGTGCGGTTTTTGGCATCAAACAGTGGCAGAACACTGCAGATGAGTGCGTTGCCAAATGGAAATGTTGAAATTGTCTAA

>Glyma12g05550.3   sequence type=CDS   gene model=Glyma12g05550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGCACTTTTTCATTTGCATTTAAGAAGGGGTTTTGGGAAATGGGGAAGCCTTTGTTTTATGAGATCTTGGAAAAACCTGCCACAAGTTGCATCATAGGAATATGCAGCATGATTTGGTTCTACATACAGAAGAAAAATATTGGGTATTCACATGTGGGTCTGAGTTATGAGACCGCTGTAGAAGGGCATCATTGGAGGATAATTACTTCTGCTTTTTCTCATATTAGTGTTATTCATCTTGTTTTTAATATGAGTGCACTTTGGAGTCTTGGGGTGGTAGAGCAGCTTGGTCACTTGGGCCTTGGTGTTGAGTACTACTTGCAGTACACACTTGTGTTGGTTGTTCTATCAGGAGTGCTGGTTCTTGCAATGTATCATTTGTTGATTCAAAGGTTCAAGCTTGAGTATTTTCGTCGAGTGACGGCTGTTGGGTATTCCTGTGTTGTTTTTGGGTGGATGACAATTCTTTCTGTGAAGCAACCATCTTCCAAGTTGGATCTCTTTGGTTTTCTTTCTCTTCCTATCAGTTTTGCGCCGTTTGAATCGCTTATTTTCACTTCGATCATTGTTCCTCAGGCGAGTTTTCTTGGCCATTTATCGGGCATTGTTGTTGGATATGCTATAGCATGGGGTTTGATTCATGGGATGAGCAATTACTGGGCACTTTCCTTGTTGGGATGGATTGCGCTTGTCTTTGTTTTGAGTTTGAAGAGATCTGGTGCCGTTGACCTAAACTTTCTTGAGATTGAATCTGTTACAGATCCTTCCCTACCATCTGTGCGGTTTTTGGCATCAAACAGTGGCAGAACACTGCAGATGAGTGCGTTGCCAAATGGAAATGTTGAAATTGTCTAA

Predicted protein sequences of Glyma12g05550

Limit To All Plant Sequences

>Glyma12g05550.1   sequence type=predicted peptide   gene model=Glyma12g05550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRTFSFAFKKGFWEMGKPLFYEILEKPATSCIIGICSMIWFYIQKKNIGYSHVGLSYETAVEGHHWRIITSAFSHISVIHLVFNMSALWSLGVVEQLGHLGLGVEYYLQYTLVLVVLSGVLVLAMYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIVVGYAIAWGLIHGMSNYWALSLLGWIALVFVLSLKRSGAVDLNFLEIESVTDPSLPSVRFLASNSGRTLQMSALPNGNVEIV*

>Glyma12g05550.2   sequence type=predicted peptide   gene model=Glyma12g05550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKPLFYEILEKPATSCIIGICSMIWFYIQKKNIGYSHVGLSYETAVEGHHWRIITSAFSHISVIHLVFNMSALWSLGVVEQLGHLGLGVEYYLQYTLVLVVLSGVLVLAMYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIVVGYAIAWGLIHGMSNYWALSLLGWIALVFVLSLKRSGAVDLNFLEIESVTDPSLPSVRFLASNSGRTLQMSALPNGNVEIV*

>Glyma12g05550.3   sequence type=predicted peptide   gene model=Glyma12g05550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRTFSFAFKKGFWEMGKPLFYEILEKPATSCIIGICSMIWFYIQKKNIGYSHVGLSYETAVEGHHWRIITSAFSHISVIHLVFNMSALWSLGVVEQLGHLGLGVEYYLQYTLVLVVLSGVLVLAMYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIVVGYAIAWGLIHGMSNYWALSLLGWIALVFVLSLKRSGAVDLNFLEIESVTDPSLPSVRFLASNSGRTLQMSALPNGNVEIV*

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