Glyma12g05510 - SoyBase

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Report for Sequence Feature Glyma12g05510

Feature Type:	gene_model
Chromosome:	Gm12
Start:	3673129
stop:	3677570
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g05510

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G06110	AT	Annotation by Michelle Graham. TAIR10: SKP1/ASK-interacting protein 16 \| chr1:1853237-1854938 REVERSE LENGTH=436	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0019243	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0019005	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: SCF ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG4408	KOG	Putative Mg2+ and Co2+ transporter CorD	JGI		ISS
PTHR14289	Panther	F-BOX ONLY PROTEIN 3	JGI		ISS
PTHR14289:SF10	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF04379	PFAM	Protein of unknown function (DUF525)	JGI		ISS
UniRef100_C6T901	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T901_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7JEW2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box protein SKIP16 n=1 Tax=Medicago truncatula RepID=G7JEW2_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g05510

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g05510

Paralog	Evidence	Comments
Glyma11g13500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g05510 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g051100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g05510

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g05510

Limit To All Plant Sequences

>Glyma12g05510.1   sequence type=CDS   gene model=Glyma12g05510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTTGGAATCGGTGGGAGATTTAGCGATTAACGTGATTCTGAAAAAATTAGGAGCCCAAGACATTGCGAGAGTGGCGTGTGTGAGCAAAAGGTTCAGTTCTTCCGCTTCCGATGACACTCTTTGGATCAATCTCTGCTTCAATGAACTCGCTTTGACACAACCCCTCGATCATCTCGGAAACCCTCTCTCTTCCTTCAAGGAATGCTATCTAGCATGGAGAGGAGCTTTTGTTATGTACCCTTGGTCTCTTGTTAAGCGTGTAAAAAGGTGCTGGGATAGAATAAAAACCTGGTTGACCAATAATTTTCCTGAAGCGGAGGCCACTCTTTGTAAAGGTGCAACTGAAGCTGACATTCAGGAGTTGGAGAATGTATTAAAGGTGAAATTGCCTCTTCCTACAAGGATCCTTTATCGCTTTCACAATGGGCAAGAATTTGCAAAGGCAGATCCAGAAACTAGTACATTTGGCAGATCTTTGGGTCTAATTGGTGGCTACTCCTTCTATGGTCATTTGGTGAATGTTTATCTATTACCTATATGTCAGATAATCCTAGAAACTCAGCAAACTAGGCGTCGCTTGAGCTTTTTAAGAAGATCAAAGTATGTTCTTGTGGCTGCTTCATCCACATACAGTAGAAAGTTGTTTTTCCTCAACTGTACCAATGGTCAACTATATGTCGGGACCAGGTCTCCTCTTACCGAAAGAGACATAATCCCTTGTGTACCTCATGACCTGATTAGTTTACATCAGGAATTGAATAGTTCAGAGCAACAAGATGCCATGCTACTGTGGTTAGAAGAACATGGTCGCCGTTTAGAACACGGCTTTATCAAACTTCATGATGAAGGAAATGGCAAAAGCATTAATCTTTTCCCAGAAGAACCCCATATTTGTTCAACGGCTGTTACTAATGGTGTGAAGGTTCGCGCTTCTGCACTGGTTATCCCTGAGTTGATGGATCTTCAAGATGACCTTGGAGAGTACTTATTTGCTTATTCAATCCGCTTGTCCCTTGAACCTCAAGGATGCATTATTAATGGAATGTCCTTCAGCTCTTGCCAGCTCCATTGGAGGCACTGGATCATCCGTGCTAATGATATTGTTATATCTGATGTCAGTGGAAAAGCTGTTATAGGACAGTTTCCACTTTTGCGTCCGGGTGCTCAAGAATTTGTTTATCAGAGTTGCACGCCTCTACCAACACCATCAGGTTCTATTGAAGGTTCTTTTACATTTATACCCGGCAGATTGGCAGACCCAAAAGGAGACCCTTTTCTAGCTACAGTGGCTCGTTTCCCGCTCCAGCTGCCAGACTATATATTCTGA

Predicted protein sequences of Glyma12g05510

Limit To All Plant Sequences

>Glyma12g05510.1   sequence type=predicted peptide   gene model=Glyma12g05510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLESVGDLAINVILKKLGAQDIARVACVSKRFSSSASDDTLWINLCFNELALTQPLDHLGNPLSSFKECYLAWRGAFVMYPWSLVKRVKRCWDRIKTWLTNNFPEAEATLCKGATEADIQELENVLKVKLPLPTRILYRFHNGQEFAKADPETSTFGRSLGLIGGYSFYGHLVNVYLLPICQIILETQQTRRRLSFLRRSKYVLVAASSTYSRKLFFLNCTNGQLYVGTRSPLTERDIIPCVPHDLISLHQELNSSEQQDAMLLWLEEHGRRLEHGFIKLHDEGNGKSINLFPEEPHICSTAVTNGVKVRASALVIPELMDLQDDLGEYLFAYSIRLSLEPQGCIINGMSFSSCQLHWRHWIIRANDIVISDVSGKAVIGQFPLLRPGAQEFVYQSCTPLPTPSGSIEGSFTFIPGRLADPKGDPFLATVARFPLQLPDYIF*

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