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Report for Sequence Feature Glyma12g05490
Feature Type: gene_model
Chromosome: Gm12
Start: 3659117
stop: 3671134
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma12g05490
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G43410 AT
Annotation by Michelle Graham. TAIR10: RNA binding | chr2:18026397-18030989 REVERSE LENGTH=901
SoyBase E_val: 0 ISS
GO:0006378 GO-bp
Annotation by Michelle Graham. GO Biological Process: mRNA polyadenylation
SoyBase N/A ISS
GO:0009553 GO-bp
Annotation by Michelle Graham. GO Biological Process: embryo sac development
SoyBase N/A ISS
GO:0009790 GO-bp
Annotation by Michelle Graham. GO Biological Process: embryo development
SoyBase N/A ISS
GO:0009911 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of flower development
SoyBase N/A ISS
GO:0010228 GO-bp
Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem
SoyBase N/A ISS
GO:0031048 GO-bp
Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA
SoyBase N/A ISS
GO:0000785 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chromatin
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
GO:0003676 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding
SoyBase N/A ISS
GO:0003723 GO-mf
Annotation by Michelle Graham. GO Molecular Function: RNA binding
SoyBase N/A ISS
KOG0131
KOG
Splicing factor 3b, subunit 4
JGI ISS
PTHR23189 Panther
RNA RECOGNITION MOTIF-CONTAINING
JGI ISS
PTHR23189:SF31 Panther
FPA
JGI ISS
PF00076 PFAM
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
JGI ISS
PF07744 PFAM
SPOC domain
JGI ISS
UniRef100_G7JEW1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Flowering time control protein FPA n=1 Tax=Medicago truncatula RepID=G7JEW1_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233D122 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233D122 related cluster n=1 Tax=unknown RepID=UPI000233D122
SoyBase E_val: 0 ISS
Expression Patterns of Glyma12g05490
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma12g05490
Paralog Evidence Comments
Glyma11g13490 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma12g05490 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.12g051000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma12g05490
Coding sequences of Glyma12g05490
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g05490.2 sequence type=CDS gene model=Glyma12g05490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCGTTTCCGGCGAAACCAACGCGGGATTTCGACGAGTCGGCGAGTCCGTCGAACAACCTGTGGGTGGGGAATCTGGCGGCGGACGTCACCGACGCTGATCTGATGGAGCTCTTCGCCAAATACGGCGCACTCGACAGCGTGACTTCCTATTCCGCTCGCAGTTACGCTTTCGTGTTCTTCAAACGCGTCGAAGACGCCAAAGCCGCCAAGAACGCTCTCCAAGGAACCTCTCTCCGCGGCAGTTCCTTGAAGATTGAGTTTGCCAGACCGGCAAAGGCATGTAAACAACTTTGGGTGGGTGGTATTAGTCAGGCTGTTACAAAGGAAGATTTGGAAGCTGAATTTCAGAAATTTGGTAAAATTGAGGATTTTAAGTTCTTCAGAGACAGAAATACTGCATGTGTTGAATTTTTCAATTTGGAAGATGCTACTCAGGCCATGAAAATCATGAATGGGAAACGAATTGGCGGGGAGCATATTCGTGTTGACTTCCTTCGATCACAATCTACAAAAAGGGATCAGCTTGATTATGGGCAGTTTCAGGGAAAAAACTTGGGGCATACTGATGCTTATTCTGGACAGAAAAGACCATTGCATTCACAGCCTCCAATGGGGGGAAAAGGTGACAGTCAACCAAGTAATATTTTGTGGATCGGTTATCCGCCTGCTGTTCAGATTGATGAACAAATGCTCCACAATGCCATGATTTTGTTTGGTGAAATCGAGAGAATCAAGAGTTTTCCTTTGAGAAATTATTCTATTGTTGAGTTTAGAAGTGTTGATGAAGCTCGACGTGCAAAAGAGGGCCTTCAAGGACGCCTTTTTAATGATCCTCGAATAACAATTATGTATTCTAGCAGTGACCTAGTACCTGGCAGTGATTACCCCAGCTTTTTTCCTGGAAGTAATGGACCAAGACCTGATGTATTGCTGAATGAGCATCCATTTCGACCATTACAAATGGATGTATTTGGTCATAATCGTCCAATGGTTCTAAATAATTTTCCTGGACAGTTACCACCTAGTGGTATTATGGGACTAAATGTACCAATGCGACCTTTTGGTAATCACGGTGGTGTTGAATCTGTTATTTCTGGCCCTGAGTTTAACGAGATTGATGCGCTCCATAAATTTCAGGATGGTAGCTCCAAGAGTAACATGGGTCCAAACTGGAAAAGGCCATCTCCTCCTGCACAGAGCACTAGGCTTCCTACCAGATCAACGTCTGGAGCATGGGATGTACTTGACAAAAACCATATTCCAAGAGATTCTAAACGTTCAAGGATAGATGGACCCTTGCCTGTTGCTGAAGCCCTATTTCCTTTTAGGAATATTGATGATCGGGGGTTAGCTCTAGAACAAGCATATGGGATTGATCCAGCTATTGATGGAAATGGTTCTGGTCCATATGTAAACATTCAAGGAAAGAGTCACCTTGGTCCAGTTAGCTCAAGGATTACAGCTGGAGTACATGATATTGTCCAACCTGATATTGATCATATTTGGCGCGGAGTTATTGCAAAAGGGGGAACTCCTGTTTGCCGTGCTAGATGTGTACCAATTGGGAAAGGAATTGGGACTGAGCTTCCTGGTGTTGTTGATTGCTCGGCTAGGACGGGATTGGATATACTCACAAAACATTATGCTGATGCAATTGGTTTTGATATTGTTTTTTTTCTGCCTGATAGTGAAGACGATTTTGCTTCATATACTGAGTTCCTACGCTATCTTAGTGCGAAAAATCGTGCTGGTGTTGCCAAATTTGTTGATAACACCACCTTATTCTTGGTGCCTCCTTCTGATTTTCTCACAAGAGTTTTGAAAGTCACTGGACCTGAGCGTCTATATGGTGTGGTTCTTAAGTTTCCACCAGTGCCAAGTAGTGCACCTATGCAACAGCCATCGCATTTGCCTGTACCGACAACTCAGTATATGCAACATATTCCTCCTTCACAGACTGAATATGGTTTGATTCCTGTTAAAGAGGAACAGGTTTTGCCAATGGATTATAACAGACCGTTGCATGAGGATTCTAAGCTTCCTGCTAAACCAGTCTATCCACCAGCAGGTGGGCCCCCTCCAGTTCATTCTGGGCCTCCCGATTATTCTACTAATAATACTGTTGCTGGGTCCCAAGCTGGAGTTGCATTAACACCTGAGCTTATTGCAACTTTAGCTTCTTTACTTCCTACAACTACACAATTACCTACCACTGATGGTGCCAAGTCAGCAGTAGGTTCTTCGACCATGAAGCTTCCATTTCCTCCCATGACACCAAATGATGGAAATCAATCTCATCAAATTGCAGATCAATCCACTCATCCTCCTCAACAGTTGAGGAACATGTATAACGTTCACAATGCTCCCTATCAGCCCTATCCACCATTATCTGCTCCTGCTGGCAATCCTGCTCAAGTGTCTGGCAGTTCTCATATCCAAGATACTGCTGCCAACATGCAGCAGCAGCAAGGTGCTGTTTCATCAAGACACATGCCTAATTTCATGATGCCTACTCAAAGTGGACAGGTAGCTGTATCCCCCCATGCCAGTCAGCATTACCAAGTTGAGGTCTCCCCCAGCAATCAGAAAGGCTTTGGAGTGGTGCAGGGAACAGATGCCTCTGCTTTATACAATTCTCAGGCTTTCCAGCAACCTAATAACAATTCTCAGGCTTTCCAGCAACCTAATAACAATTCTCAGGCTTTCCAGCAACTTAATAACAATTCTCTGGCTTTCCAGCAACCTAATAACAATTCTCAGGCTTTCCAGCAACCTAATAACAATTCTCAGGCTTTCCAGCAACCTAATAACAATTCTCAGGCTTTCCAGCAACCTAATAATTCTTTTGCCTTATCTAATCAAACTAATAGTGCTAATGCTTCACAGCAGCAAACTGCCATGCTGTATACAGTGGACCAGGTAAACTCGGACACCCCCAATCAGCAACTTCCTATGTTTGGAGTCAGTCAAGGACAAACAGAGGTGGAGGCTGATAAGAACCAGAGATACCAGTCAACGTTACAATTTGCTGCCAACCTTCTTCTCCAACTACAACAGCAACAGCAACAAGCCCCAGGAGGACATGGGCCAGGACAATGA
Predicted protein sequences of Glyma12g05490
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma12g05490.2 sequence type=predicted peptide gene model=Glyma12g05490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPFPAKPTRDFDESASPSNNLWVGNLAADVTDADLMELFAKYGALDSVTSYSARSYAFVFFKRVEDAKAAKNALQGTSLRGSSLKIEFARPAKACKQLWVGGISQAVTKEDLEAEFQKFGKIEDFKFFRDRNTACVEFFNLEDATQAMKIMNGKRIGGEHIRVDFLRSQSTKRDQLDYGQFQGKNLGHTDAYSGQKRPLHSQPPMGGKGDSQPSNILWIGYPPAVQIDEQMLHNAMILFGEIERIKSFPLRNYSIVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSSDLVPGSDYPSFFPGSNGPRPDVLLNEHPFRPLQMDVFGHNRPMVLNNFPGQLPPSGIMGLNVPMRPFGNHGGVESVISGPEFNEIDALHKFQDGSSKSNMGPNWKRPSPPAQSTRLPTRSTSGAWDVLDKNHIPRDSKRSRIDGPLPVAEALFPFRNIDDRGLALEQAYGIDPAIDGNGSGPYVNIQGKSHLGPVSSRITAGVHDIVQPDIDHIWRGVIAKGGTPVCRARCVPIGKGIGTELPGVVDCSARTGLDILTKHYADAIGFDIVFFLPDSEDDFASYTEFLRYLSAKNRAGVAKFVDNTTLFLVPPSDFLTRVLKVTGPERLYGVVLKFPPVPSSAPMQQPSHLPVPTTQYMQHIPPSQTEYGLIPVKEEQVLPMDYNRPLHEDSKLPAKPVYPPAGGPPPVHSGPPDYSTNNTVAGSQAGVALTPELIATLASLLPTTTQLPTTDGAKSAVGSSTMKLPFPPMTPNDGNQSHQIADQSTHPPQQLRNMYNVHNAPYQPYPPLSAPAGNPAQVSGSSHIQDTAANMQQQQGAVSSRHMPNFMMPTQSGQVAVSPHASQHYQVEVSPSNQKGFGVVQGTDASALYNSQAFQQPNNNSQAFQQPNNNSQAFQQLNNNSLAFQQPNNNSQAFQQPNNNSQAFQQPNNNSQAFQQPNNSFALSNQTNSANASQQQTAMLYTVDQVNSDTPNQQLPMFGVSQGQTEVEADKNQRYQSTLQFAANLLLQLQQQQQQAPGGHGPGQ*