Glyma12g05436 - SoyBase

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Report for Sequence Feature Glyma12g05436

Feature Type:	gene_model
Chromosome:	Gm12
Start:	3613301
stop:	3616012
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g05436

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G27790	AT	Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein \| chr2:11847335-11849285 REVERSE LENGTH=240	SoyBase	E_val: 3.00E-92	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
PTHR20957	Panther	UNCHARACTERIZED	JGI		ISS
UniRef100_B9SH88	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9SH88_RICCO	SoyBase	E_val: 3.00E-96	ISS
UniRef100_C6T5J6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=C6T5J6_SOYBN	SoyBase	E_val: 4.00E-158	ISS

Expression Patterns of Glyma12g05436

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g05436 not represented in the dataset	Glyma12g05436 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g05436 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g050500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g05436

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g05436

Limit To All Plant Sequences

>Glyma12g05436.2   sequence type=transcript   gene model=Glyma12g05436   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAATGACTCACTAGACCGGTTTTTCTTGGGTTAACCGTAAACCACCATCAATGCATTTCTCGTTCCTGACTGCGGCAGTGTTCTTCCGTCGTCGTTGTCACCACCGCGTAACTTTTGCCGTTCATATATAAACAAGCCTTGATTGTTAATTCTCCAATGCCTCGTTACAAGGACGAATCCCCTGCAGTTCGGGTCTACACTGTTTGTGATGAATCCAGATATTTGATTGTGAGGAACGTTCCAGAACTAGGTTGTGGGGATGAGTTGCTGAAATTGTTTTCTTCCTATGGAGAAGTCGAGGAGTGTAAGCCAATGGATGCAGAGGACTGTGAGAAATACACTGATGTATTTTGGATCAAATTCCGCCTTGTCAACAATGCCAGGTTTGCAAAAAGAAAATTGGACGATTTTGTTTTCTTTGGGAATAAACTGCAGGTTTCTTATGCTCCCCAATTTGAGAGCCTGTCTGACACAATGGATAAGTTAGAGGGAAGAAGAAGGGAGGTTTTAGCACGATTGAACCCTAGAAGATCTAAAGAGACCACAGCCTCAAGCTCTAAGCCCCGGATTACATCAAAGACCAATTGCTCACAACATTTAGATTCTAATGCAAGGGATGTAGAGCTCAAAGGAGGTTCACACAGTGGTAATTTTCCAATAAGAATGGTTTCCTCTAATGAGGATTATTTTGCTTCAAATTCCATGAATCAAACAGTGAGTCTTGTGCGGGATAAGCTTGATAAGATTCAATCAAGTGGTGAGAATACAAAAGCTGGATCTGCATCAAAGAAACAACGAGTTGATAATAGGAAGAGAATTTAATCTGCAAATTAATGTTTTGTTCTCACCTGCACTCCTATGTTTTATATGATTTTGGGTGTGATAAAGCTCAATCCCCAAGCCTGTAAGGAAATTTTTTATTTGAGGAGTCTCATCCAATTATATTGTGGGTCACATACTCTGTTCCAAGATAGGTTTTTTTTTTTGTATAATGTTACTAACTGGTAGCGCATCAGCAATCCGTCCGGGTAACGGTGCTAGAAGCCTAGAACACTTTTGAATTCCCAGTCACCATGCAATTTGTTTGCTAGCTTTTTGTTAACCAAGCCATGCCTTATAGGAAACCATATATTGAAATCGCATGTATATTATTTGAAATTTTAAATTATATAGCAAATACGGTTTCCATTTGGATTGGTGCTAGTTATTTCGTGCATAAATGATGCTATGATTCCGCAGCCACAGCTTAATCGGTGATGATCCTGCTACATTGGGTGGGTGCTGCTGCACCTAACATTTTAATTGCATATGTACCAGAGACTTTGTACTTCCACACTTGGGCC

>Glyma12g05436.3   sequence type=transcript   gene model=Glyma12g05436   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAATGACTCACTAGACCGGTTTTTCTTGGGTTAACCGTAAACCACCATCAATGCATTTCTCGTTCCTGACTGCGGCAGTGTTCTTCCGTCGTCGTTGTCACCACCGCGTAACTTTTGCCGTTCATATATAAACAAGCCTTGATTGGTTTGTCCTTAATCAATTTGCTGAGTTCTAAAACCTAATTCGATCCCTGAATTTTCACATGCATGGATCTTATAACATACGCTAATTTTTCAGTTTCCTAACCCAACCCTAGTTTCCACGATTGCCGTTTACTCTCTTCATATAAACCTTAATTTTTCTTTTCCCTCTGAACAGTTAATTCTCCAATGCCTCGTTACAAGGACGAATCCCCTGCAGTTCGGGTCTACACTGTTTGTGATGAATCCAGATATTTGATTGTGAGGAACGTTCCAGAACTAGGTTGTGGGGATGAGTTGCTGAAATTGTTTTCTTCCTATGGAGAAGTCGAGGAGTGTAAGCCAATGGATGCAGAGGACTGTGAGAAATACACTGATGTATTTTGGATCAAATTCCGCCTTGTCAACAATGCCAGGTTTGCAAAAAGAAAATTGGACGATTTTGTTTTCTTTGGGAATAAACTGCAGGTTTCTTATGCTCCCCAATTTGAGAGCCTGTCTGACACAATGGATAAGTTAGAGGGAAGAAGAAGGGAGGTTTTAGCACGATTGAACCCTAGAAGATCTAAAGAGACCACAGCCTCAAGCTCTAAGCCCCGGATTACATCAAAGACCAATTGCTCACAACATTTAGATTCTAATGCAAGGGATGTAGAGCTCAAAGGAGGTTCACACAGTGGTAATTTTCCAATAAGAATGGTTTCCTCTAATGAGGTTTGTTGCTTCTCTGTTATATGAATATTAAAAATTTACTCTGGTTTCTTGCTCTCTCCTTTTTTTTTTTGCACTGATTACTCTGTCCCCTTTGAATTGAAGGAAAATTTCTGGGTGGGGATGAATAAAATTCTTCTTTGCAATTAATGTTCCTAGAATATTT

Coding sequences of Glyma12g05436

Limit To All Plant Sequences

>Glyma12g05436.1   sequence type=CDS   gene model=Glyma12g05436   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCGTTACAAGGACGAATCCCCTGCAGTTCGGGTCTACACTGTTTGTGATGAATCCAGATATTTGATTGTGAGGAACGTTCCAGAACTAGGTTGTGGGGATGAGTTGCTGAAATTGTTTTCTTCCTATGGAGAAGTCGAGGAGTGTAAGCCAATGGATGCAGAGGACTGTGAGAAATACACTGATGTATTTTGGATCAAATTCCGCCTTGTCAACAATGCCAGGTTTGCAAAAAGAAAATTGGACGATTTTGTTTTCTTTGGGAATAAACTGCAGGTTTCTTATGCTCCCCAATTTGAGAGCCTGTCTGACACAATGGATAAGTTAGAGGGAAGAAGAAGGGAGGTTTTAGCACGATTGAACCCTAGAAGATCTAAAGAGACCACAGCCTCAAGCTCTAAGCCCCGGATTACATCAAAGACCAATTGCTCACAACATTTAGATTCTAATGCAAGGGATGTAGAGCTCAAAGGAGGTTCACACAGTGGTAATTTTCCAATAAGAATGGTTTCCTCTAATGAGGATTATTTTGCTTCAAATTCCATGAATCAAACAGTGAGTCTTGTGCGGGATAAGCTTGATAAGATTCAATCAAGTGGTGAGAATACAAAAGCTGGATCTGCATCAAAGAAACAACGAGTTGATAATAGGAAGAGAATTTAA

>Glyma12g05436.2   sequence type=CDS   gene model=Glyma12g05436   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCGTTACAAGGACGAATCCCCTGCAGTTCGGGTCTACACTGTTTGTGATGAATCCAGATATTTGATTGTGAGGAACGTTCCAGAACTAGGTTGTGGGGATGAGTTGCTGAAATTGTTTTCTTCCTATGGAGAAGTCGAGGAGTGTAAGCCAATGGATGCAGAGGACTGTGAGAAATACACTGATGTATTTTGGATCAAATTCCGCCTTGTCAACAATGCCAGGTTTGCAAAAAGAAAATTGGACGATTTTGTTTTCTTTGGGAATAAACTGCAGGTTTCTTATGCTCCCCAATTTGAGAGCCTGTCTGACACAATGGATAAGTTAGAGGGAAGAAGAAGGGAGGTTTTAGCACGATTGAACCCTAGAAGATCTAAAGAGACCACAGCCTCAAGCTCTAAGCCCCGGATTACATCAAAGACCAATTGCTCACAACATTTAGATTCTAATGCAAGGGATGTAGAGCTCAAAGGAGGTTCACACAGTGGTAATTTTCCAATAAGAATGGTTTCCTCTAATGAGGATTATTTTGCTTCAAATTCCATGAATCAAACAGTGAGTCTTGTGCGGGATAAGCTTGATAAGATTCAATCAAGTGGTGAGAATACAAAAGCTGGATCTGCATCAAAGAAACAACGAGTTGATAATAGGAAGAGAATTTAA

>Glyma12g05436.3   sequence type=CDS   gene model=Glyma12g05436   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCGTTACAAGGACGAATCCCCTGCAGTTCGGGTCTACACTGTTTGTGATGAATCCAGATATTTGATTGTGAGGAACGTTCCAGAACTAGGTTGTGGGGATGAGTTGCTGAAATTGTTTTCTTCCTATGGAGAAGTCGAGGAGTGTAAGCCAATGGATGCAGAGGACTGTGAGAAATACACTGATGTATTTTGGATCAAATTCCGCCTTGTCAACAATGCCAGGTTTGCAAAAAGAAAATTGGACGATTTTGTTTTCTTTGGGAATAAACTGCAGGTTTCTTATGCTCCCCAATTTGAGAGCCTGTCTGACACAATGGATAAGTTAGAGGGAAGAAGAAGGGAGGTTTTAGCACGATTGAACCCTAGAAGATCTAAAGAGACCACAGCCTCAAGCTCTAAGCCCCGGATTACATCAAAGACCAATTGCTCACAACATTTAGATTCTAATGCAAGGGATGTAGAGCTCAAAGGAGGTTCACACAGTGGTAATTTTCCAATAAGAATGGTTTCCTCTAATGAGGTTTGTTGCTTCTCTGTTATATGA

Predicted protein sequences of Glyma12g05436

Limit To All Plant Sequences

>Glyma12g05436.1   sequence type=predicted peptide   gene model=Glyma12g05436   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPRYKDESPAVRVYTVCDESRYLIVRNVPELGCGDELLKLFSSYGEVEECKPMDAEDCEKYTDVFWIKFRLVNNARFAKRKLDDFVFFGNKLQVSYAPQFESLSDTMDKLEGRRREVLARLNPRRSKETTASSSKPRITSKTNCSQHLDSNARDVELKGGSHSGNFPIRMVSSNEDYFASNSMNQTVSLVRDKLDKIQSSGENTKAGSASKKQRVDNRKRI*

>Glyma12g05436.2   sequence type=predicted peptide   gene model=Glyma12g05436   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPRYKDESPAVRVYTVCDESRYLIVRNVPELGCGDELLKLFSSYGEVEECKPMDAEDCEKYTDVFWIKFRLVNNARFAKRKLDDFVFFGNKLQVSYAPQFESLSDTMDKLEGRRREVLARLNPRRSKETTASSSKPRITSKTNCSQHLDSNARDVELKGGSHSGNFPIRMVSSNEDYFASNSMNQTVSLVRDKLDKIQSSGENTKAGSASKKQRVDNRKRI*

>Glyma12g05436.3   sequence type=predicted peptide   gene model=Glyma12g05436   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPRYKDESPAVRVYTVCDESRYLIVRNVPELGCGDELLKLFSSYGEVEECKPMDAEDCEKYTDVFWIKFRLVNNARFAKRKLDDFVFFGNKLQVSYAPQFESLSDTMDKLEGRRREVLARLNPRRSKETTASSSKPRITSKTNCSQHLDSNARDVELKGGSHSGNFPIRMVSSNEVCCFSVI*

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