SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G30710 | AT | Annotation by Michelle Graham. TAIR10: Ypt/Rab-GAP domain of gyp1p superfamily protein | chr2:13086147-13088991 REVERSE LENGTH=440 | SoyBase | E_val: 0 | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| KOG1092 | KOG | Ypt/Rab-specific GTPase-activating protein GYP1 | JGI | ISS | |
| KOG4567 | KOG | GTPase-activating protein | JGI | ISS | |
| PTHR22957 | Panther | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN | JGI | ISS | |
| PTHR22957:SF26 | Panther | TBC1 DOMAIN FAMILY MEMBER 22A | JGI | ISS | |
| PF00566 | PFAM | TBC domain | JGI | ISS | |
| UniRef100_G7JEW7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: TBC1 domain family member 22A n=1 Tax=Medicago truncatula RepID=G7JEW7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D76E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D76E related cluster n=1 Tax=unknown RepID=UPI000233D76E | SoyBase | E_val: 0 | ISS |
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Glyma12g05350 not represented in the dataset |
Glyma12g05350 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g13330 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g049600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g05350.2 sequence type=transcript gene model=Glyma12g05350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACAAGCGCCAAGAAGATGTGCGCAACATAGCTACTACCCTCGACTCCAGATTCAATCAGACCCTCAGAAATGTTCAAGGGTTACTCAAAGGTCGTAGTATACCTGGTAAAATATTATTGAGCCGTAGGGTAGACCCTCCGGATAACTCAAACTCGAAGGCATCCTCACCAAATTACAAAAGGAGCTTTTCTCACAATGATGCTGGCACAAGTGATCACACATCTGGGGCAGTAGAGGAGGAATTTCAGAGTACAAGCAAACCAATTAGTATTGCCAATGCCAGTAAGCTAAAAGTGTCGACCTCCCTTGGAGGGAGCCCGCCTGAAGAATTCCGTAAGTCTACGATGGGTGCTAGAGCTACAGATTCTGCAAGAGTTATGAAGTTCACTAAGGTGCTTTCAGGGACTGTGGTTATATTAGACAAGTTGCGGGAATTAGCTTGGAGTGGTGTTCCAGACAATATGCGTCCTAAAGTGTGGAGACTTCTGTTGGGATATGCACCACCTAATTCAGATAGAAGGGAGGGAGTTCTAAGAAGGAAACGCCTTGAGTATCTTGACTGTATTTCTCAGTATTATGATATTCCTGATACAGAACGTTCAGATGACGAGGTCAACATGCTTCGTCAGATTGGTGTTGATTGTCCAAGAACTGTTCCCGATGTTCCATTCTTCCAGCAGCAGCAAGTTCAGAAATCATTGGAACGTATTCTTTATGCATGGGCCATTCGACATCCTGCAAATATAATCTCTAATATAGAGGCTGACTGCTACTGGTGCTTGTCAAAGTTGCTTGATGGTATGCAAGACCATTACACATTCGCTCAACCTGGAATTCAGAGGCTTGTTTTTAAGTTGAAGGAATTGGTCAGGAGGATTGATGGTAACCTTTTTCTAAGGCCTTTTGTTTTCCTCCAAGCATTGTATAGTTTTATGAAATTTAAATGCCTCACTATTTTTTATTGATTTGGTACCATTTCTATTCTTAAGTTTCATTTTCTATTTTGAAAGTGTCATTGATTCTAAATTTTAGCAATATTATTTGTGTGTTGAATATTTCATGTTTCACATGAATCTTCTACCCTGTTTGTGTCAACATATTAATAATTATTTTTGACTTTTTATGGTAAAAATACTCGCATATTTTGCACCTTCAATTAGAACAAAGAGAAGAATGTGAACCACAGAAGCTGAGAACATGTAACATTACCATTCTACCCTCAGCAATAGAAATAGGTGTATAGATAGCAATGTAAAAAAGCTTTTGAAAACTTCACGTGGTTCACATTGTATAGTTTGTAAAGCATCTTCAATTTCCGCCTTAAATTCTTCCTATTGAAATTCTTTAACCTGACGTGTAAATGAGTATGTTTTATGGTGGCCAGTGGGTGTTTGTAAAATAACTTATGACTGTGGTTAAAATTCTGTGTGCTTATTTTGGATTTTTTTCCCACATAGAAGAGTATAATCTGTTTGGGTATCACCATGTCTTGAAAAATTCAACCAGACATTCCCTACTATTTGCCTTTACATGGAAGTGTCAAAATTTGATCATCATCTCATTTATAAGGAATTCATAGAATGAATTACCAAACCTTCTCCTTATTTTTGTTGCTATATATATAGTTATTTGTATGTATTCAAATGTAATCTGATGTAGTGAAACTTTTGAGCTGCACCAGAGCCTGTTTCGCGGCACATCGAGGATCAGGGACTTGAATTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGTCTTCTCATCCGTGAGGTTTGCAAGGATATTCTTATAACTATAAGTGGGAAAATTTTCTCAAGAACATACATATAATTGATAACATGACAGAATGAAAACATTGGTCTGGGATAAATATGGGATGATTTTGTGCTTTTTTACTAATGATGTCTGATTATGTAATTAGATACCATTCCATCTCATCACACGCCTTTGGGACACATATTTAGCTGAAGGAGATGCCTTACCAGACTTCCTAGTATATATATTTGCCAGCTTCCTTCTAACGTGGTCAGACAAACTCCAGAAACTTGATTTCCAAGAATTGGTAATGTTTCTTCAACACCTTCCAACAGAGAACTGGACTCACCAGGAGCTTGAGATGGTGCTTTCCCGGGCATTTATGTGGCACACCATGTTCAACAACTCTCCTAGCCATTTAGCTAGCTGAGCAGGCGATTGTGGTTTCTGAATTTAGTTCTCCTTCAATTTCCCCTTTTCTTTTCTTGCTTTCTATCACTTTTGCTCTTGCTCAGTGTGTGGTGCTTTTTGTTATTTTTTTTAACCAATTTTACTTGTACGTTACCTTGTAATATTTTGTAAAGGAGATACAAAAACAATTGTTACATAGAGCGAGTCTATTTTTGTTGTATTAACGATATTTATTCCAGAACAGCGATCAATACCCAGTTTGT
>Glyma12g05350.1 sequence type=CDS gene model=Glyma12g05350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACAAGCGCCAAGAAGATGTGCGCAACATAGCTACTACCCTCGACTCCAGATTCAATCAGACCCTCAGAAATGTTCAAGGGTTACTCAAAGGTCGTAGTATACCTGGTAAAATATTATTGAGCCGTAGGGTAGACCCTCCGGATAACTCAAACTCGAAGGCATCCTCACCAAATTACAAAAGGAGCTTTTCTCACAATGATGCTGGCACAAGTGATCACACATCTGGGGCAGTAGAGGAGGAATTTCAGAGTACAAGCAAACCAATTAGTATTGCCAATGCCAGTAAGCTAAAAGTGTCGACCTCCCTTGGAGGGAGCCCGCCTGAAGAATTCCGTAAGTCTACGATGGGTGCTAGAGCTACAGATTCTGCAAGAGTTATGAAGTTCACTAAGGTGCTTTCAGGGACTGTGGTTATATTAGACAAGTTGCGGGAATTAGCTTGGAGTGGTGTTCCAGACAATATGCGTCCTAAAGTGTGGAGACTTCTGTTGGGATATGCACCACCTAATTCAGATAGAAGGGAGGGAGTTCTAAGAAGGAAACGCCTTGAGTATCTTGACTGTATTTCTCAGTATTATGATATTCCTGATACAGAACGTTCAGATGACGAGGTCAACATGCTTCGTCAGATTGGTGTTGATTGTCCAAGAACTGTTCCCGATGTTCCATTCTTCCAGCAGCAGCAAGTTCAGAAATCATTGGAACGTATTCTTTATGCATGGGCCATTCGACATCCTGCAAATATAATCTCTAATATAGAGGCTGACTGCTACTGGTGCTTGTCAAAGTTGCTTGATGGTATGCAAGACCATTACACATTCGCTCAACCTGGAATTCAGAGGCTTGTTTTTAAGTTGAAGGAATTGGTCAGGAGGATTGATGAGCCTGTTTCGCGGCACATCGAGGATCAGGGACTTGAATTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGTCTTCTCATCCGTGAGATACCATTCCATCTCATCACACGCCTTTGGGACACATATTTAGCTGAAGGAGATGCCTTACCAGACTTCCTAGTATATATATTTGCCAGCTTCCTTCTAACGTGGTCAGACAAACTCCAGAAACTTGATTTCCAAGAATTGGTAATGTTTCTTCAACACCTTCCAACAGAGAACTGGACTCACCAGGAGCTTGAGATGGTGCTTTCCCGGGCATTTATGTGGCACACCATGTTCAACAACTCTCCTAGCCATTTAGCTAGCTGA >Glyma12g05350.2 sequence type=CDS gene model=Glyma12g05350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACAAGCGCCAAGAAGATGTGCGCAACATAGCTACTACCCTCGACTCCAGATTCAATCAGACCCTCAGAAATGTTCAAGGGTTACTCAAAGGTCGTAGTATACCTGGTAAAATATTATTGAGCCGTAGGGTAGACCCTCCGGATAACTCAAACTCGAAGGCATCCTCACCAAATTACAAAAGGAGCTTTTCTCACAATGATGCTGGCACAAGTGATCACACATCTGGGGCAGTAGAGGAGGAATTTCAGAGTACAAGCAAACCAATTAGTATTGCCAATGCCAGTAAGCTAAAAGTGTCGACCTCCCTTGGAGGGAGCCCGCCTGAAGAATTCCGTAAGTCTACGATGGGTGCTAGAGCTACAGATTCTGCAAGAGTTATGAAGTTCACTAAGGTGCTTTCAGGGACTGTGGTTATATTAGACAAGTTGCGGGAATTAGCTTGGAGTGGTGTTCCAGACAATATGCGTCCTAAAGTGTGGAGACTTCTGTTGGGATATGCACCACCTAATTCAGATAGAAGGGAGGGAGTTCTAAGAAGGAAACGCCTTGAGTATCTTGACTGTATTTCTCAGTATTATGATATTCCTGATACAGAACGTTCAGATGACGAGGTCAACATGCTTCGTCAGATTGGTGTTGATTGTCCAAGAACTGTTCCCGATGTTCCATTCTTCCAGCAGCAGCAAGTTCAGAAATCATTGGAACGTATTCTTTATGCATGGGCCATTCGACATCCTGCAAATATAATCTCTAATATAGAGGCTGACTGCTACTGGTGCTTGTCAAAGTTGCTTGATGGTATGCAAGACCATTACACATTCGCTCAACCTGGAATTCAGAGGCTTGTTTTTAAGTTGAAGGAATTGGTCAGGAGGATTGATGGTAACCTTTTTCTAAGGCCTTTTGTTTTCCTCCAAGCATTGTATAGTTTTATGAAATTTAAATGCCTCACTATTTTTTATTGA
>Glyma12g05350.1 sequence type=predicted peptide gene model=Glyma12g05350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNKRQEDVRNIATTLDSRFNQTLRNVQGLLKGRSIPGKILLSRRVDPPDNSNSKASSPNYKRSFSHNDAGTSDHTSGAVEEEFQSTSKPISIANASKLKVSTSLGGSPPEEFRKSTMGARATDSARVMKFTKVLSGTVVILDKLRELAWSGVPDNMRPKVWRLLLGYAPPNSDRREGVLRRKRLEYLDCISQYYDIPDTERSDDEVNMLRQIGVDCPRTVPDVPFFQQQQVQKSLERILYAWAIRHPANIISNIEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVSRHIEDQGLEFLQFAFRWFNCLLIREIPFHLITRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQELVMFLQHLPTENWTHQELEMVLSRAFMWHTMFNNSPSHLAS* >Glyma12g05350.2 sequence type=predicted peptide gene model=Glyma12g05350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNKRQEDVRNIATTLDSRFNQTLRNVQGLLKGRSIPGKILLSRRVDPPDNSNSKASSPNYKRSFSHNDAGTSDHTSGAVEEEFQSTSKPISIANASKLKVSTSLGGSPPEEFRKSTMGARATDSARVMKFTKVLSGTVVILDKLRELAWSGVPDNMRPKVWRLLLGYAPPNSDRREGVLRRKRLEYLDCISQYYDIPDTERSDDEVNMLRQIGVDCPRTVPDVPFFQQQQVQKSLERILYAWAIRHPANIISNIEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDGNLFLRPFVFLQALYSFMKFKCLTIFY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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