Glyma12g05270 - SoyBase

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Report for Sequence Feature Glyma12g05270

Feature Type:	gene_model
Chromosome:	Gm12
Start:	3510018
stop:	3514559
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g05270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G11800	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44150.1); Has 74 Blast hits to 73 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). \| chr3:3726154-3727562 FORWARD LENGTH=246	SoyBase	E_val: 2.00E-87	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR21454	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR21454:SF1	Panther	SUBFAMILY NOT NAMED	JGI		ISS
UniRef100_I1LQA1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LQA1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2HPL4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expp1 protein n=1 Tax=Solanum tuberosum RepID=Q2HPL4_SOLTU	SoyBase	E_val: 1.00E-85	ISS

Expression Patterns of Glyma12g05270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g05270 not represented in the dataset	Glyma12g05270 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g05270

Paralog	Evidence	Comments
Glyma11g13240	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g05270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g048800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g05270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g05270

Limit To All Plant Sequences

>Glyma12g05270.3   sequence type=transcript   gene model=Glyma12g05270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGTTGTTACACGTTCATTTCATTCTTATAAATAATATACACATGTTGACACCACTTTGTTTCTATCACCACAAAGATTGTTCTATTCTGTCCTACACACGTATTGACCCAGAAAAGAAAACTTTTTTTTTTTTTTTTTGAAGATGGGGATGGATGAATTTTTTGCCATGTCCAAGATGAGGAAAGCAGATTTGGTGAAACGGGTGGTGGTCATTGCCGTGATGGCTATGTTTGTTGCAGATGCAGCTGATACAAATGATGTTTATAGTCCATGTCTTGATGCTAAAGTTCAGAGAGGAGATGGTTTTACATTTGGTATTGCATTTTCGGACAAGCAATTTTTCTCCCAAGGTAATGGTCCACAGCTTTCACCTTGTGACAAACGCCTCGACCTCGCGAACAAAGGAGCCCAGCTTTCTGTTTTCAGGCCAACGGTTGATGAGGTCTCCCTACTCACCATCAATAGGAGCACCTCAAACCCGGGCAACAATGCATATATGGTTGCATTTGCTGGGCAGAAATATGCAGCAAGGTCACTACCTATTATGTTTGCTGACAACAGTCACACAATTACTAGTTTCACTTTGGTTCTTGAATTTCAAGAGGGAACCCTTCAAAACTTGTATTGGAAGAGTTTCGGTTGTGATGGATGTCCTAGTGGAAGCATTTGCCTGAATCAACAAGACTGTGCAGTTCCAAACAAAGAGTGTCAAAAGAATGGAGGGACTGCCTGCAACATGGGAATACAGTTGGCATTTTCAGGCACTGACAAGAATCTCGATGCTCTTAATTCTTGGTACGAAGTGCAAAATCTACGGCAGTACTCCCTCTATGGTCTATTCTCCAATCTTCGTGACTCCATCATTGGGCCATATGAAAATCTCTTTTAAGTCTACATATTTCCAGCTTGTACGCATGTTCTTTTGAGAGAGATAGAAGAAAATATGAAGAGAAACAGAGAATAGAAGCTAGGGAGAAACAATTTGGAATACATAGTATGACAACATAAAGAAACACGAGATAATTTCCTGAAAGAGCCAG

>Glyma12g05270.4   sequence type=transcript   gene model=Glyma12g05270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGCTTCATAAAAAAGTTTGCCACCATATTCCACCTGGATTAGTTAACCTTTTTCTATGTCTTGGAATCACAGACACGCCAACCATCAGCTTCAATCTCTTCAACATTCTTAAAATACAAAACTCGTGTATCTTGGTTTTTGAGATGGGGATGGATGAATTTTTTGCCATGTCCAAGATGAGGAAAGCAGATTTGGTGAAACGGGTGGTGGTCATTGCCGTGATGGCTATGTTTGTTGCAGATGCAGCTGATACAAATGATGTTTATAGTCCATGTCTTGATGCTAAAGTTCAGAGAGGAGATGGTTTTACATTTGGTATTGCATTTTCGGACAAGCAATTTTTCTCCCAAGGTAATGGTCCACAGCTTTCACCTTGTGACAAACGCCTCGACCTCGCGAACAAAGGAGCCCAGCTTTCTGTTTTCAGGCCAACGGTTGATGAGGTCTCCCTACTCACCATCAATAGGAGCACCTCAAACCCGGTTCTTGAATTTCAAGAGGGAACCCTTCAAAACTTGTATTGGAAGAGTTTCGGTTGTGATGGATGTCCTAGTGGAAGCATTTGCCTGAATCAACAAGACTGTGCAGTTCCAAACAAAGAGTGTCAAAAGAATGGAGGGACTGCCTGCAACATGGGAATACAGTTGGCATTTTCAGGCACTGACAAGAATCTCGATGCTCTTAATTCTTGGTACGAAGTGCAAAATCTACGGCAGTACTCCCTCTATGGTCTATTCTCCAATCTTCGTGACTCCATCATTGGGCCATATGAAAATCTCTTTTAAGTCTACATATTTCCAGCTTGTACGCATGTTCTTTTGAGAGAGATAGAAGAAAATATGAAGAGAAACAGAGAATAGAAGCTAGGGAGAAACAATTTGGAATACATAGTATGACAACATAAAGAAACACGAGATAATTTCCTGAAAGAGCCAG

>Glyma12g05270.5   sequence type=transcript   gene model=Glyma12g05270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGTTGTTACACGTTCATTTCATTCTTATAAATAATATACACATGTTGACACCACTTTGTTTCTATCACCACAAAGATTGTTCTATTCTGTCCTACACACGTATTGACCCAGAAAAGAAAACTTTTTTTTTTTTTTTTTGAAGATGGGGATGGATGAATTTTTTGCCATGTCCAAGATGAGGAAAGCAGATTTGGTGAAACGGGTGGTGGTCATTGCCGTGATGGCTATGTTTGTTGCAGATGCAGCTGATACAAATGATGTTTATAGTCCATGTCTTGATGCTAAAGTTCAGAGAGGAGATGGTTTTACATTTGGTATTGCATTTTCGGACAAGCAATTTTTCTCCCAAGGTAATGGTCCACAGCTTTCACCTTGTGACAAACGCCTCGACCTCGCGAACAAAGGAGCCCAGCTTTCTGTTTTCAGGCCAACGGTTGATGAGGTCTCCCTACTCACCATCAATAGGAGCACCTCAAACCCGGTTCTTGAATTTCAAGAGGGAACCCTTCAAAACTTGTATTGGAAGAGTTTCGGTTGTGATGGATGTCCTAGTGGAAGCATTTGCCTGAATCAACAAGACTGTGCAGTTCCAAACAAAGAGTGTCAAAAGAATGGAGGGACTGCCTGCAACATGGGAATACAGTTGGCATTTTCAGGCACTGACAAGAATCTCGATGCTCTTAATTCTTGGTACGAAGTGCAAAATCTACGGCAGTACTCCCTCTATGGTCTATTCTCCAATCTTCGTGACTCCATCATTGGGCCATATGAAAATCTCTTTTAAGTCTACATATTTCCAGCTTGTACGCATGTTCTTTTGAGAGAGATAGAAGAAAATATGAAGAGAAACAGAGAATAGAAGCTAGGGAGAAACAATTTGGAATACATAGTATGACAACATAAAGAAACACGAGATAATTTCCTGAAAGAGCCAG

Coding sequences of Glyma12g05270

Limit To All Plant Sequences

>Glyma12g05270.2   sequence type=CDS   gene model=Glyma12g05270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGATGGATGAATTTTTTGCCATGTCCAAGATGAGGAAAGCAGATTTGGTGAAACGGGTGGTGGTCATTGCCGTGATGGCTATGTTTGTTGCAGATGCAGCTGATACAAATGATGTTTATAGTCCATGTCTTGATGCTAAAGTTCAGAGAGGAGATGGTTTTACATTTGGTATTGCATTTTCGGACAAGCAATTTTTCTCCCAAGGTAATGGTCCACAGCTTTCACCTTGTGACAAACGCCTCGACCTCGCGAACAAAGGAGCCCAGCTTTCTGTTTTCAGGCCAACGGTTGATGAGGTCTCCCTACTCACCATCAATAGGAGCACCTCAAACCCGGGCAACAATGCATATATGGTTGCATTTGCTGGGCAGAAATATGCAGCAAGGTCACTACCTATTATGTTTGCTGACAACAGTCACACAATTACTAGTTTCACTTTGGTTCTTGAATTTCAAGAGGGAACCCTTCAAAACTTGTATTGGAAGAGTTTCGGTTGTGATGGATGTCCTAGTGGAAGCATTTGCCTGAATCAACAAGACTGTGCAGTTCCAAACAAAGAGTGTCAAAAGAATGGAGGGACTGCCTGCAACATGGGAATACAGTTGGCATTTTCAGGCACTGACAAGAATCTCGATGCTCTTAATTCTTGGTACGAAGTGCAAAATCTACGGCAGTACTCCCTCTATGGTCTATTCTCCAATCTTCGTGACTCCATCATTGGGCCATATGAAAATCTCTTTTAA

>Glyma12g05270.3   sequence type=CDS   gene model=Glyma12g05270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGATGGATGAATTTTTTGCCATGTCCAAGATGAGGAAAGCAGATTTGGTGAAACGGGTGGTGGTCATTGCCGTGATGGCTATGTTTGTTGCAGATGCAGCTGATACAAATGATGTTTATAGTCCATGTCTTGATGCTAAAGTTCAGAGAGGAGATGGTTTTACATTTGGTATTGCATTTTCGGACAAGCAATTTTTCTCCCAAGGTAATGGTCCACAGCTTTCACCTTGTGACAAACGCCTCGACCTCGCGAACAAAGGAGCCCAGCTTTCTGTTTTCAGGCCAACGGTTGATGAGGTCTCCCTACTCACCATCAATAGGAGCACCTCAAACCCGGGCAACAATGCATATATGGTTGCATTTGCTGGGCAGAAATATGCAGCAAGGTCACTACCTATTATGTTTGCTGACAACAGTCACACAATTACTAGTTTCACTTTGGTTCTTGAATTTCAAGAGGGAACCCTTCAAAACTTGTATTGGAAGAGTTTCGGTTGTGATGGATGTCCTAGTGGAAGCATTTGCCTGAATCAACAAGACTGTGCAGTTCCAAACAAAGAGTGTCAAAAGAATGGAGGGACTGCCTGCAACATGGGAATACAGTTGGCATTTTCAGGCACTGACAAGAATCTCGATGCTCTTAATTCTTGGTACGAAGTGCAAAATCTACGGCAGTACTCCCTCTATGGTCTATTCTCCAATCTTCGTGACTCCATCATTGGGCCATATGAAAATCTCTTTTAA

>Glyma12g05270.4   sequence type=CDS   gene model=Glyma12g05270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGATGGATGAATTTTTTGCCATGTCCAAGATGAGGAAAGCAGATTTGGTGAAACGGGTGGTGGTCATTGCCGTGATGGCTATGTTTGTTGCAGATGCAGCTGATACAAATGATGTTTATAGTCCATGTCTTGATGCTAAAGTTCAGAGAGGAGATGGTTTTACATTTGGTATTGCATTTTCGGACAAGCAATTTTTCTCCCAAGGTAATGGTCCACAGCTTTCACCTTGTGACAAACGCCTCGACCTCGCGAACAAAGGAGCCCAGCTTTCTGTTTTCAGGCCAACGGTTGATGAGGTCTCCCTACTCACCATCAATAGGAGCACCTCAAACCCGGTTCTTGAATTTCAAGAGGGAACCCTTCAAAACTTGTATTGGAAGAGTTTCGGTTGTGATGGATGTCCTAGTGGAAGCATTTGCCTGAATCAACAAGACTGTGCAGTTCCAAACAAAGAGTGTCAAAAGAATGGAGGGACTGCCTGCAACATGGGAATACAGTTGGCATTTTCAGGCACTGACAAGAATCTCGATGCTCTTAATTCTTGGTACGAAGTGCAAAATCTACGGCAGTACTCCCTCTATGGTCTATTCTCCAATCTTCGTGACTCCATCATTGGGCCATATGAAAATCTCTTTTAA

>Glyma12g05270.5   sequence type=CDS   gene model=Glyma12g05270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGATGGATGAATTTTTTGCCATGTCCAAGATGAGGAAAGCAGATTTGGTGAAACGGGTGGTGGTCATTGCCGTGATGGCTATGTTTGTTGCAGATGCAGCTGATACAAATGATGTTTATAGTCCATGTCTTGATGCTAAAGTTCAGAGAGGAGATGGTTTTACATTTGGTATTGCATTTTCGGACAAGCAATTTTTCTCCCAAGGTAATGGTCCACAGCTTTCACCTTGTGACAAACGCCTCGACCTCGCGAACAAAGGAGCCCAGCTTTCTGTTTTCAGGCCAACGGTTGATGAGGTCTCCCTACTCACCATCAATAGGAGCACCTCAAACCCGGTTCTTGAATTTCAAGAGGGAACCCTTCAAAACTTGTATTGGAAGAGTTTCGGTTGTGATGGATGTCCTAGTGGAAGCATTTGCCTGAATCAACAAGACTGTGCAGTTCCAAACAAAGAGTGTCAAAAGAATGGAGGGACTGCCTGCAACATGGGAATACAGTTGGCATTTTCAGGCACTGACAAGAATCTCGATGCTCTTAATTCTTGGTACGAAGTGCAAAATCTACGGCAGTACTCCCTCTATGGTCTATTCTCCAATCTTCGTGACTCCATCATTGGGCCATATGAAAATCTCTTTTAA

Predicted protein sequences of Glyma12g05270

Limit To All Plant Sequences

>Glyma12g05270.2   sequence type=predicted peptide   gene model=Glyma12g05270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGMDEFFAMSKMRKADLVKRVVVIAVMAMFVADAADTNDVYSPCLDAKVQRGDGFTFGIAFSDKQFFSQGNGPQLSPCDKRLDLANKGAQLSVFRPTVDEVSLLTINRSTSNPGNNAYMVAFAGQKYAARSLPIMFADNSHTITSFTLVLEFQEGTLQNLYWKSFGCDGCPSGSICLNQQDCAVPNKECQKNGGTACNMGIQLAFSGTDKNLDALNSWYEVQNLRQYSLYGLFSNLRDSIIGPYENLF*

>Glyma12g05270.3   sequence type=predicted peptide   gene model=Glyma12g05270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGMDEFFAMSKMRKADLVKRVVVIAVMAMFVADAADTNDVYSPCLDAKVQRGDGFTFGIAFSDKQFFSQGNGPQLSPCDKRLDLANKGAQLSVFRPTVDEVSLLTINRSTSNPGNNAYMVAFAGQKYAARSLPIMFADNSHTITSFTLVLEFQEGTLQNLYWKSFGCDGCPSGSICLNQQDCAVPNKECQKNGGTACNMGIQLAFSGTDKNLDALNSWYEVQNLRQYSLYGLFSNLRDSIIGPYENLF*

>Glyma12g05270.4   sequence type=predicted peptide   gene model=Glyma12g05270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGMDEFFAMSKMRKADLVKRVVVIAVMAMFVADAADTNDVYSPCLDAKVQRGDGFTFGIAFSDKQFFSQGNGPQLSPCDKRLDLANKGAQLSVFRPTVDEVSLLTINRSTSNPVLEFQEGTLQNLYWKSFGCDGCPSGSICLNQQDCAVPNKECQKNGGTACNMGIQLAFSGTDKNLDALNSWYEVQNLRQYSLYGLFSNLRDSIIGPYENLF*

>Glyma12g05270.5   sequence type=predicted peptide   gene model=Glyma12g05270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGMDEFFAMSKMRKADLVKRVVVIAVMAMFVADAADTNDVYSPCLDAKVQRGDGFTFGIAFSDKQFFSQGNGPQLSPCDKRLDLANKGAQLSVFRPTVDEVSLLTINRSTSNPVLEFQEGTLQNLYWKSFGCDGCPSGSICLNQQDCAVPNKECQKNGGTACNMGIQLAFSGTDKNLDALNSWYEVQNLRQYSLYGLFSNLRDSIIGPYENLF*

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