Glyma12g05150 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma12g05150

Feature Type:	gene_model
Chromosome:	Gm12
Start:	3432976
stop:	3436225
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g05150

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G50830	AT	Annotation by Michelle Graham. TAIR10: cold-regulated 413-plasma membrane 2 \| chr3:18894109-18895355 REVERSE LENGTH=203	SoyBase	E_val: 1.00E-85	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05562	PFAM	Cold acclimation protein WCOR413	JGI		ISS
UniRef100_C6SWQ8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SWQ8_SOYBN	SoyBase	E_val: 3.00E-136	ISS
UniRef100_G7JEZ7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cold acclimation protein COR413-PM1 n=1 Tax=Medicago truncatula RepID=G7JEZ7_MEDTR	SoyBase	E_val: 4.00E-101	ISS

Expression Patterns of Glyma12g05150

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g05150

Paralog	Evidence	Comments
Glyma11g13060	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g05150 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g047500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g05150

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g05150

Limit To All Plant Sequences

>Glyma12g05150.2   sequence type=transcript   gene model=Glyma12g05150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATCTCCACGTGGCCTTTCCTTATCATAGTGGTAAGATGTGCAATTGTACATATAGCTCTTAATGTTTGCTTTGACTTTGTTTCATAGGCTCCTTTTTGATTACGAAAATGTGGAAGAGAACGGGTTTTGAAGAAGAAGCAGTTCAATTGATCAACTCAGATTTCAGGGACCTAAGTCTAGCTGCTAATAGACTCGCCCATCATGCCATCAAACTTGGTGGCATTGGCTTTGGAGCCTCTTTTTTCGGATTGTTTGCTGCCATTGCTGCTATGTATTTATCTGTTGATTTTGGATCGTACAAACTGGAAAACAAATATTCTCACAGCACTACTCATTCCATACATTTTCTTCAGCTTGCCTTCATTAATTTTCGACGTCTTCAGGGGAGAGCTTGGAAAATGGATTGCTGCAGTTGCTGTTGTATTACGCCTTTTCCTTCCAAGACACTTCCCTGATTGGCTGGAATTGCCTGGTGCTCTGATTCTTCTTATCGTTGTAGCTCCTTCTCTAATTGCAAGCACCTTTAGAGACAACATTGTTGGGGTGGTAGTGTGCCTCATCATTGCATGTTATTTGCTGCAAGAACACATTCGGGCTTCTGGTGGTTTCAGAAACTCCTTCACTAAAGCTCACGGCATATCAAATTCCATTGGCATAATACTTCTGTTGGTTTATCCCATCTGGGCGCTGGTGGTCATACTTTTTTAGGCACCACCATTTGGACTTGGTTGATATGTGAGAATTAAACCAAGTGTCTTCTGTATCATTCATTTGTTGCAACTTGATATCTATAAACACCCGGCCATTGTTTTGTGATTCATGTTTGTCCTAAGACCTAAAGTTAGCATGTGTTAAAAAGTGGAATAAAATCTCAGTTTAAGTCCTCTGGTTTCATAGAATGTAGAAAACAAAAGATGAAGAGGATTGATGTGGTGTCTTTCTAGCTGTCGTGTATTCATAAATCATGTATGATTTGGGAAATCGTTGTATTTTTACCTGTGGGATATAATATAAATTTACATTTGTTGCTGCTCTGTATTATTACATCATTTTGTTTCCAGCAAATGCATTCCTAGCAACTACAACAGAATTC

>Glyma12g05150.3   sequence type=transcript   gene model=Glyma12g05150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATCTCCACGTGGCCTTTCCTTATCATAGTGGTAAGATGTGCAATTGTACATATAGCTCTTAATGTTTGCTTTGACTTTGTTTCATAGGCTCCTTTTTGATTACGAAAATGTGGAAGAGAACGGGTTTTGAAGAAGAAGCAGTTCAATTGATCAACTCAGATTTCAGGGACCTAAGTCTAGCTGCTAATAGACTCGCCCATCATGCCATCAAACTTGGTGGCATTGGCTTTGGAGCCTCTTTTTTCGGATTGTTTGCTGCCATTGCTGCTATTTATCTGTTGATTTTGGATCGTACAAACTGGAAAACAAATATTCTCACAGCACTACTCATTCCATACATTTTCTTCAGCTTGCCTTCATTAATTTTCGACGTCTTCAGGGGAGAGCTTGGAAAATGGATTGCTGCAGTTGCTGTTGTATTACGCCTTTTCCTTCCAAGACACTTCCCTGCTCCTTCTCTAATTGCAAGCACCTTTAGAGACAACATTGTTGGGGTGGTAGTGTGCCTCATCATTGCATGTTATTTGCTGCAAGAACACATTCGGGCTTCTGGTGGTTTCAGAAACTCCTTCACTAAAGCTCACGGCATATCAAATTCCATTGGCATAATACTTCTGTTGGTTTATCCCATCTGGGCGCTGGTGGTCATACTTTTTTAGGCACCACCATTTGGACTTGGTTGATATGTGAGAATTAAACCAAGTGTCTTCTGTATCATTCATTTGTTGCAACTTGATATCTATAAACACCCGGCCATTGTTTTGTGATTCATGTTTGTCCTAAGACCTAAAGTTAGCATGTGTTAAAAAGTGGAATAAAATCTCAGTTTAAGTCCTCTGGTTTCATAGAATGTAGAAAACAAAAGATGAAGAGGATTGATGTGGTGTCTTTCTAGCTGTCGTGTATTCATAAATCATGTATGATTTGGGAAATCGTTGTATTTTTACCTGTGGGATATAATATAAATTTACATTTGTTGCTGCTCTGTATTATTACATCATTTTGTTTCCAGCAAATGCATTCCTAGCAACTACAACAGAATTC

>Glyma12g05150.4   sequence type=transcript   gene model=Glyma12g05150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATCTCCACGTGGCCTTTCCTTATCATAGTGGTAAGATGTGCAATTGTACATATAGCTCTTAATGTTTGCTTTGACTTTGTTTCATAGGCTCCTTTTTGATTACGAAAATGTGGAAGAGAACGGGTTTTGAAGAAGAAGCAGTTCAATTGATCAACTCAGATTTCAGGGACCTAAGTCTAGCTGCTAATAGACTCGCCCATCATGCCATCAAACTTGGTGGCATTGGCTTTGGAGCCTCTTTTTTCGGATTGTTTGCTGCCATTGCTGCTATGGGAGAGCTTGGAAAATGGATTGCTGCAGTTGCTGTTGTATTACGCCTTTTCCTTCCAAGACACTTCCCTGATTGGCTGGAATTGCCTGGTGCTCTGATTCTTCTTATCGTTGTAGCTCCTTCTCTAATTGCAAGCACCTTTAGAGACAACATTGTTGGGGTGGTAGTGTGCCTCATCATTGCATGTTATTTGCTGCAAGAACACATTCGGGCTTCTGGTGGTTTCAGAAACTCCTTCACTAAAGCTCACGGCATATCAAATTCCATTGGCATAATACTTCTGTTGGTTTATCCCATCTGGGCGCTGGTGGTCATACTTTTTTAGGCACCACCATTTGGACTTGGTTGATATGTGAGAATTAAACCAAGTGTCTTCTGTATCATTCATTTGTTGCAACTTGATATCTATAAACACCCGGCCATTGTTTTGTGATTCATGTTTGTCCTAAGACCTAAAGTTAGCATGTGTTAAAAAGTGGAATAAAATCTCAGTTTAAGTCCTCTGGTTTCATAGAATGTAGAAAACAAAAGATGAAGAGGATTGATGTGGTGTCTTTCTAGCTGTCGTGTATTCATAAATCATGTATGATTTGGGAAATCGTTGTATTTTTACCTGTGGGATATAATATAAATTTACATTTGTTGCTGCTCTGTATTATTACATCATTTTGTTTCCAGCAAATGCATTCCTAGCAACTACAACAGAATTC

Coding sequences of Glyma12g05150

Limit To All Plant Sequences

>Glyma12g05150.1   sequence type=CDS   gene model=Glyma12g05150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGAAGAGAACGGGTTTTGAAGAAGAAGCAGTTCAATTGATCAACTCAGATTTCAGGGACCTAAGTCTAGCTGCTAATAGACTCGCCCATCATGCCATCAAACTTGGTGGCATTGGCTTTGGAGCCTCTTTTTTCGGATTGTTTGCTGCCATTGCTGCTATTTATCTGTTGATTTTGGATCGTACAAACTGGAAAACAAATATTCTCACAGCACTACTCATTCCATACATTTTCTTCAGCTTGCCTTCATTAATTTTCGACGTCTTCAGGGGAGAGCTTGGAAAATGGATTGCTGCAGTTGCTGTTGTATTACGCCTTTTCCTTCCAAGACACTTCCCTGATTGGCTGGAATTGCCTGGTGCTCTGATTCTTCTTATCGTTGTAGCTCCTTCTCTAATTGCAAGCACCTTTAGAGACAACATTGTTGGGGTGGTAGTGTGCCTCATCATTGCATGTTATTTGCTGCAAGAACACATTCGGGCTTCTGGTGGTTTCAGAAACTCCTTCACTAAAGCTCACGGCATATCAAATTCCATTGGCATAATACTTCTGTTGGTTTATCCCATCTGGGCGCTGGTGGTCATACTTTTTTAG

>Glyma12g05150.2   sequence type=CDS   gene model=Glyma12g05150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCATCAAACTTGGTGGCATTGGCTTTGGAGCCTCTTTTTTCGGATTGTTTGCTGCCATTGCTGCTATGTATTTATCTGTTGATTTTGGATCGTACAAACTGGAAAACAAATATTCTCACAGCACTACTCATTCCATACATTTTCTTCAGCTTGCCTTCATTAATTTTCGACGTCTTCAGGGGAGAGCTTGGAAAATGGATTGCTGCAGTTGCTGTTGTATTACGCCTTTTCCTTCCAAGACACTTCCCTGATTGGCTGGAATTGCCTGGTGCTCTGATTCTTCTTATCGTTGTAGCTCCTTCTCTAATTGCAAGCACCTTTAGAGACAACATTGTTGGGGTGGTAGTGTGCCTCATCATTGCATGTTATTTGCTGCAAGAACACATTCGGGCTTCTGGTGGTTTCAGAAACTCCTTCACTAAAGCTCACGGCATATCAAATTCCATTGGCATAATACTTCTGTTGGTTTATCCCATCTGGGCGCTGGTGGTCATACTTTTTTAG

>Glyma12g05150.3   sequence type=CDS   gene model=Glyma12g05150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGAAGAGAACGGGTTTTGAAGAAGAAGCAGTTCAATTGATCAACTCAGATTTCAGGGACCTAAGTCTAGCTGCTAATAGACTCGCCCATCATGCCATCAAACTTGGTGGCATTGGCTTTGGAGCCTCTTTTTTCGGATTGTTTGCTGCCATTGCTGCTATTTATCTGTTGATTTTGGATCGTACAAACTGGAAAACAAATATTCTCACAGCACTACTCATTCCATACATTTTCTTCAGCTTGCCTTCATTAATTTTCGACGTCTTCAGGGGAGAGCTTGGAAAATGGATTGCTGCAGTTGCTGTTGTATTACGCCTTTTCCTTCCAAGACACTTCCCTGCTCCTTCTCTAATTGCAAGCACCTTTAGAGACAACATTGTTGGGGTGGTAGTGTGCCTCATCATTGCATGTTATTTGCTGCAAGAACACATTCGGGCTTCTGGTGGTTTCAGAAACTCCTTCACTAAAGCTCACGGCATATCAAATTCCATTGGCATAATACTTCTGTTGGTTTATCCCATCTGGGCGCTGGTGGTCATACTTTTTTAG

>Glyma12g05150.4   sequence type=CDS   gene model=Glyma12g05150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGAAGAGAACGGGTTTTGAAGAAGAAGCAGTTCAATTGATCAACTCAGATTTCAGGGACCTAAGTCTAGCTGCTAATAGACTCGCCCATCATGCCATCAAACTTGGTGGCATTGGCTTTGGAGCCTCTTTTTTCGGATTGTTTGCTGCCATTGCTGCTATGGGAGAGCTTGGAAAATGGATTGCTGCAGTTGCTGTTGTATTACGCCTTTTCCTTCCAAGACACTTCCCTGATTGGCTGGAATTGCCTGGTGCTCTGATTCTTCTTATCGTTGTAGCTCCTTCTCTAATTGCAAGCACCTTTAGAGACAACATTGTTGGGGTGGTAGTGTGCCTCATCATTGCATGTTATTTGCTGCAAGAACACATTCGGGCTTCTGGTGGTTTCAGAAACTCCTTCACTAAAGCTCACGGCATATCAAATTCCATTGGCATAATACTTCTGTTGGTTTATCCCATCTGGGCGCTGGTGGTCATACTTTTTTAG

Predicted protein sequences of Glyma12g05150

Limit To All Plant Sequences

>Glyma12g05150.1   sequence type=predicted peptide   gene model=Glyma12g05150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWKRTGFEEEAVQLINSDFRDLSLAANRLAHHAIKLGGIGFGASFFGLFAAIAAIYLLILDRTNWKTNILTALLIPYIFFSLPSLIFDVFRGELGKWIAAVAVVLRLFLPRHFPDWLELPGALILLIVVAPSLIASTFRDNIVGVVVCLIIACYLLQEHIRASGGFRNSFTKAHGISNSIGIILLLVYPIWALVVILF*

>Glyma12g05150.2   sequence type=predicted peptide   gene model=Glyma12g05150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSNLVALALEPLFSDCLLPLLLCIYLLILDRTNWKTNILTALLIPYIFFSLPSLIFDVFRGELGKWIAAVAVVLRLFLPRHFPDWLELPGALILLIVVAPSLIASTFRDNIVGVVVCLIIACYLLQEHIRASGGFRNSFTKAHGISNSIGIILLLVYPIWALVVILF*

>Glyma12g05150.3   sequence type=predicted peptide   gene model=Glyma12g05150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWKRTGFEEEAVQLINSDFRDLSLAANRLAHHAIKLGGIGFGASFFGLFAAIAAIYLLILDRTNWKTNILTALLIPYIFFSLPSLIFDVFRGELGKWIAAVAVVLRLFLPRHFPAPSLIASTFRDNIVGVVVCLIIACYLLQEHIRASGGFRNSFTKAHGISNSIGIILLLVYPIWALVVILF*

>Glyma12g05150.4   sequence type=predicted peptide   gene model=Glyma12g05150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWKRTGFEEEAVQLINSDFRDLSLAANRLAHHAIKLGGIGFGASFFGLFAAIAAMGELGKWIAAVAVVLRLFLPRHFPDWLELPGALILLIVVAPSLIASTFRDNIVGVVVCLIIACYLLQEHIRASGGFRNSFTKAHGISNSIGIILLLVYPIWALVVILF*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain