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Report for Sequence Feature Glyma12g05140
Feature Type: gene_model
Chromosome: Gm12
Start: 3424766
stop: 3432849
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma12g05140
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G49430 AT
Annotation by Michelle Graham. TAIR10: long-chain acyl-CoA synthetase 2 | chr1:18291188-18295641 FORWARD LENGTH=665
SoyBase E_val: 0 ISS
GO:0001676 GO-bp
Annotation by Michelle Graham. GO Biological Process: long-chain fatty acid metabolic process
SoyBase N/A ISS
GO:0002213 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response to insect
SoyBase N/A ISS
GO:0006631 GO-bp
Annotation by Michelle Graham. GO Biological Process: fatty acid metabolic process
SoyBase N/A ISS
GO:0006633 GO-bp
Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process
SoyBase N/A ISS
GO:0010025 GO-bp
Annotation by Michelle Graham. GO Biological Process: wax biosynthetic process
SoyBase N/A ISS
GO:0010143 GO-bp
Annotation by Michelle Graham. GO Biological Process: cutin biosynthetic process
SoyBase N/A ISS
GO:0010311 GO-bp
Annotation by Michelle Graham. GO Biological Process: lateral root formation
SoyBase N/A ISS
GO:0050832 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response to fungus
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005783 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum
SoyBase N/A ISS
GO:0009506 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0004467 GO-mf
Annotation by Michelle Graham. GO Molecular Function: long-chain fatty acid-CoA ligase activity
SoyBase N/A ISS
GO:0031957 GO-mf
Annotation by Michelle Graham. GO Molecular Function: very long-chain fatty acid-CoA ligase activity
SoyBase N/A ISS
KOG1256
KOG
Long-chain acyl-CoA synthetases (AMP-forming)
JGI ISS
PTHR24096 Panther
FAMILY NOT NAMED
JGI ISS
PF00501 PFAM
AMP-binding enzyme
JGI ISS
UniRef100_B9RZF1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Acyl CoA synthetase, putative n=1 Tax=Ricinus communis RepID=B9RZF1_RICCO
SoyBase E_val: 0 ISS
UniRef100_UPI000233D75E UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233D75E related cluster n=1 Tax=unknown RepID=UPI000233D75E
SoyBase E_val: 0 ISS
Expression Patterns of Glyma12g05140
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma12g05140
Paralog Evidence Comments
Glyma11g13050 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma12g05140 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.12g047400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma12g05140
Transcripts of Glyma12g05140
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g05140.2 sequence type=transcript gene model=Glyma12g05140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATTTGATGTTAAATTAAAATCCAAAAACAGTTTGAAAATCAACAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCCAGTCATTAGGAACTTCAAACTCTACGTAATTCATCAAAAGACAAAAACGGTGTATCTCTAATGGAGATTGCATTGGAAGTGGTCGAGGACACGACAACGAGGTGCCCCAGCAACCCAATGCTGGGTCGGCGTCAAAAATCCGATTCCAAGGTGGGTCCCTATGAATGGATCACATATCAGGAGGCTTATGATGCTGCCATCCGAATGGGTTCCGCCATGAGGAGCCGTGATGTCAATCCTGGAGACCGTTGTGGCATATATGGGTCCAACTGCCCCGAATGGATAATTGCAATGGAGGCTTGCAATAGTTATGCAGTAACATATGTCCCATTATATGACACCCTGGGTCCTAATGCTGTGGAGTTTATCATAAACCATGCTGAAGTTTCGATTGCATTTGTACAGGATAACAAGTTTCCTTCTGTTTTGTCATGCCTTGATCGGTGTTCCAGTCTTAAAACTGTTGTGAGTTTTGGTAATGTTTCAACCACACAAAAGAAGGAAGCTGAGGAGCTTGGTGCATCTTGCTTCTCGTGGGAAGAGTTTCTCCAGTTGGGAAATATGGATTTAGACCTTCCACTGAAAAATAAGACTAACATCTGCACAATCATGTACACAAGTGGAACAACAGGCGAGCCCAAAGGGGTCATTATTAAGAATGAGGCTTTCATGACTCAAGTGTTGTCTATTGACCAAATACTTAATTTAACTGACAGAGTGGGAACAGAAGACGACGTGTACTTTTCTTTCCTTCCTCTTGCTCATGTATATGACCAGATAATGGAGACCTATTGCATTTACAAGGGCTCCTCAATTGGATTTTGGCAAGGCGATGTCAGATTCTTGATGGAAGATATTCAAGCACTGAAACCAACTCTATTTTGTGCCGTTCCTAGAGTTTATGATCGTGTTTATGCTGGTATCAGTAGCAAAATTTCATCTGGGGGAGCACTGCAAAGTACATTGTTTCAATATGCATATAACTACAAGTTGGGATATCTGGAGAAGGGTCTTCCCCAAGACAAAGCAGCACCTTTGTTTGATAAGCTTGTGTTTGATAAGATAAAACAAGCATTAGGTGGACGGGTTCGTCTCCTGTTATCAGGAGCTGCTCCTTTGCCTAGGCATGTGGAGGAGTTTTTGAGGGTCACTTTTGGAGCTACTATGTCACAAGGATATGGTCTTACCGAAAGTTGTGGTGGGTGTTTCACTGCAATAAGCAATGTGTTTTCTATGATGGGAACGATTGGAGTTCCTATGACAACCATTGAGTCCAGGCTTGAATCTGTGCCAGAGATGGGGTATGATGCACTCTCCAGTGAAGCCCGGGGAGAAATTTGCCTTAGAGGGAATACCTTGTTCTCTGGTTACCACAAGCATCAAGATCTTACTGAAGAGGTTATGGTTGATGGTTGGTTTCATACAGGTGACATTGGAGAATGGCAGCCAAATGGAGCCATGAAAATTATTGATAGAAAAAAGAATATCTTTAAGTTGTCTCAAGGAGAATATGTTGCTGTGGAGAATATTGAAAACAAATACTTACAGTGCCCCCTTATAACATCGATTTGGGTCTATGGAAACAGTTTTGAATCTTTCTTGGTGGCAGTGGTGGTCCCTGAAAGAAAGGCCCTTGAGGATTGGGCAGTGAAGCATAATTCTACAGATGATTTCAAATCTTTATGTGAAAATCCAAAGGCAAGAAAATACATTTTGGATGAGCTCAACAACACTGGTCAGAAACACCAACTTAGAGGTTTTGAGCTGCTAAAAGCAGTTCATTTGGAACCAATTCCCTTTGACATGGAGAGAGATCTGATAACACCAACATTCAAGTTGAAGAGACCTCAATTGCTCAAGCAGTATAAGGAGTGTATTGATCAACTATACAAGGAAGCGAAGGCATAGATGGTTTGAGCCAGGTGGCTATCGGGGATTATATATGCAATTATACTGATTCCAGACAGTTTCCACAGAATCCATTTTAATTTTTTGTACACTTTGGTTCTTAAGTTAAGTGAAAAGCTACAAATAAAACTTTATATTGAAATAGTAACTGAGTTTATCCACTCAGCATTCTTAAAAAGATTACAAAATGATAGTTGGAAATTCTGATAAGCTTGATGTTTCGTGGCCTTGGAACATGTGCTTTTGCTCCTTTTTTTTATCAAGCCATTTTGGGCCTAGTGCTTGTTCCCTCATCAAGTCTATAATTTTAGCCATTAGAATACAGTGGATTAGGGTAATGCTGAACTTGTATTATTTTTCACGCCACTCTTGACCTTAAGCTTGTTAACAATGCTTTGAGTATATGTTGATAATGATAAGTTAAAGAGATGGCGGAAATTACACTTTTGAAGTGTGATAAAGATAAAAGTAGT
Coding sequences of Glyma12g05140
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g05140.1 sequence type=CDS gene model=Glyma12g05140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCGGAGGTGTACACCGTGAAGGTGGAAGAGGCAAGGCCAGCAACTCATGAAAAGCCATCAGCAGGTCCTGTCTACAGATGCATTTATGCCAAGGATGCTTTGACTGTTTTACCTTCTCATTTTGAATCTCCATGGGAATTCTTCAGGGACACGACAACGAGGTGCCCCAGCAACCCAATGCTGGGTCGGCGTCAAAAATCCGATTCCAAGGTGGGTCCCTATGAATGGATCACATATCAGGAGGCTTATGATGCTGCCATCCGAATGGGTTCCGCCATGAGGAGCCGTGATGTCAATCCTGGAGACCGTTGTGGCATATATGGGTCCAACTGCCCCGAATGGATAATTGCAATGGAGGCTTGCAATAGTTATGCAGTAACATATGTCCCATTATATGACACCCTGGGTCCTAATGCTGTGGAGTTTATCATAAACCATGCTGAAGTTTCGATTGCATTTGTACAGGATAACAAGTTTCCTTCTGTTTTGTCATGCCTTGATCGGTGTTCCAGTCTTAAAACTGTTGTGAGTTTTGGTAATGTTTCAACCACACAAAAGAAGGAAGCTGAGGAGCTTGGTGCATCTTGCTTCTCGTGGGAAGAGTTTCTCCAGTTGGGAAATATGGATTTAGACCTTCCACTGAAAAATAAGACTAACATCTGCACAATCATGTACACAAGTGGAACAACAGGCGAGCCCAAAGGGGTCATTATTAAGAATGAGGCTTTCATGACTCAAGTGTTGTCTATTGACCAAATACTTAATTTAACTGACAGAGTGGGAACAGAAGACGACGTGTACTTTTCTTTCCTTCCTCTTGCTCATGTATATGACCAGATAATGGAGACCTATTGCATTTACAAGGGCTCCTCAATTGGATTTTGGCAAGGCGATGTCAGATTCTTGATGGAAGATATTCAAGCACTGAAACCAACTCTATTTTGTGCCGTTCCTAGAGTTTATGATCGTGTTTATGCTGGTATCAGTAGCAAAATTTCATCTGGGGGAGCACTGCAAAGTACATTGTTTCAATATGCATATAACTACAAGTTGGGATATCTGGAGAAGGGTCTTCCCCAAGACAAAGCAGCACCTTTGTTTGATAAGCTTGTGTTTGATAAGATAAAACAAGCATTAGGTGGACGGGTTCGTCTCCTGTTATCAGGAGCTGCTCCTTTGCCTAGGCATGTGGAGGAGTTTTTGAGGGTCACTTTTGGAGCTACTATGTCACAAGGATATGGTCTTACCGAAAGTTGTGGTGGGTGTTTCACTGCAATAAGCAATGTGTTTTCTATGATGGGAACGATTGGAGTTCCTATGACAACCATTGAGTCCAGGCTTGAATCTGTGCCAGAGATGGGGTATGATGCACTCTCCAGTGAAGCCCGGGGAGAAATTTGCCTTAGAGGGAATACCTTGTTCTCTGGTTACCACAAGCATCAAGATCTTACTGAAGAGGTTATGGTTGATGGTTGGTTTCATACAGGTGACATTGGAGAATGGCAGCCAAATGGAGCCATGAAAATTATTGATAGAAAAAAGAATATCTTTAAGTTGTCTCAAGGAGAATATGTTGCTGTGGAGAATATTGAAAACAAATACTTACAGTGCCCCCTTATAACATCGATTTGGGTCTATGGAAACAGTTTTGAATCTTTCTTGGTGGCAGTGGTGGTCCCTGAAAGAAAGGCCCTTGAGGATTGGGCAGTGAAGCATAATTCTACAGATGATTTCAAATCTTTATGTGAAAATCCAAAGGCAAGAAAATACATTTTGGATGAGCTCAACAACACTGGTCAGAAACACCAACTTAGAGGTTTTGAGCTGCTAAAAGCAGTTCATTTGGAACCAATTCCCTTTGACATGGAGAGAGATCTGATAACACCAACATTCAAGTTGAAGAGACCTCAATTGCTCAAGCAGTATAAGGAGTGTATTGATCAACTATACAAGGAAGCGAAGGCATAG
>Glyma12g05140.2 sequence type=CDS gene model=Glyma12g05140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGATTGCATTGGAAGTGGTCGAGGACACGACAACGAGGTGCCCCAGCAACCCAATGCTGGGTCGGCGTCAAAAATCCGATTCCAAGGTGGGTCCCTATGAATGGATCACATATCAGGAGGCTTATGATGCTGCCATCCGAATGGGTTCCGCCATGAGGAGCCGTGATGTCAATCCTGGAGACCGTTGTGGCATATATGGGTCCAACTGCCCCGAATGGATAATTGCAATGGAGGCTTGCAATAGTTATGCAGTAACATATGTCCCATTATATGACACCCTGGGTCCTAATGCTGTGGAGTTTATCATAAACCATGCTGAAGTTTCGATTGCATTTGTACAGGATAACAAGTTTCCTTCTGTTTTGTCATGCCTTGATCGGTGTTCCAGTCTTAAAACTGTTGTGAGTTTTGGTAATGTTTCAACCACACAAAAGAAGGAAGCTGAGGAGCTTGGTGCATCTTGCTTCTCGTGGGAAGAGTTTCTCCAGTTGGGAAATATGGATTTAGACCTTCCACTGAAAAATAAGACTAACATCTGCACAATCATGTACACAAGTGGAACAACAGGCGAGCCCAAAGGGGTCATTATTAAGAATGAGGCTTTCATGACTCAAGTGTTGTCTATTGACCAAATACTTAATTTAACTGACAGAGTGGGAACAGAAGACGACGTGTACTTTTCTTTCCTTCCTCTTGCTCATGTATATGACCAGATAATGGAGACCTATTGCATTTACAAGGGCTCCTCAATTGGATTTTGGCAAGGCGATGTCAGATTCTTGATGGAAGATATTCAAGCACTGAAACCAACTCTATTTTGTGCCGTTCCTAGAGTTTATGATCGTGTTTATGCTGGTATCAGTAGCAAAATTTCATCTGGGGGAGCACTGCAAAGTACATTGTTTCAATATGCATATAACTACAAGTTGGGATATCTGGAGAAGGGTCTTCCCCAAGACAAAGCAGCACCTTTGTTTGATAAGCTTGTGTTTGATAAGATAAAACAAGCATTAGGTGGACGGGTTCGTCTCCTGTTATCAGGAGCTGCTCCTTTGCCTAGGCATGTGGAGGAGTTTTTGAGGGTCACTTTTGGAGCTACTATGTCACAAGGATATGGTCTTACCGAAAGTTGTGGTGGGTGTTTCACTGCAATAAGCAATGTGTTTTCTATGATGGGAACGATTGGAGTTCCTATGACAACCATTGAGTCCAGGCTTGAATCTGTGCCAGAGATGGGGTATGATGCACTCTCCAGTGAAGCCCGGGGAGAAATTTGCCTTAGAGGGAATACCTTGTTCTCTGGTTACCACAAGCATCAAGATCTTACTGAAGAGGTTATGGTTGATGGTTGGTTTCATACAGGTGACATTGGAGAATGGCAGCCAAATGGAGCCATGAAAATTATTGATAGAAAAAAGAATATCTTTAAGTTGTCTCAAGGAGAATATGTTGCTGTGGAGAATATTGAAAACAAATACTTACAGTGCCCCCTTATAACATCGATTTGGGTCTATGGAAACAGTTTTGAATCTTTCTTGGTGGCAGTGGTGGTCCCTGAAAGAAAGGCCCTTGAGGATTGGGCAGTGAAGCATAATTCTACAGATGATTTCAAATCTTTATGTGAAAATCCAAAGGCAAGAAAATACATTTTGGATGAGCTCAACAACACTGGTCAGAAACACCAACTTAGAGGTTTTGAGCTGCTAAAAGCAGTTCATTTGGAACCAATTCCCTTTGACATGGAGAGAGATCTGATAACACCAACATTCAAGTTGAAGAGACCTCAATTGCTCAAGCAGTATAAGGAGTGTATTGATCAACTATACAAGGAAGCGAAGGCATAG
Predicted protein sequences of Glyma12g05140
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma12g05140.1 sequence type=predicted peptide gene model=Glyma12g05140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPEVYTVKVEEARPATHEKPSAGPVYRCIYAKDALTVLPSHFESPWEFFRDTTTRCPSNPMLGRRQKSDSKVGPYEWITYQEAYDAAIRMGSAMRSRDVNPGDRCGIYGSNCPEWIIAMEACNSYAVTYVPLYDTLGPNAVEFIINHAEVSIAFVQDNKFPSVLSCLDRCSSLKTVVSFGNVSTTQKKEAEELGASCFSWEEFLQLGNMDLDLPLKNKTNICTIMYTSGTTGEPKGVIIKNEAFMTQVLSIDQILNLTDRVGTEDDVYFSFLPLAHVYDQIMETYCIYKGSSIGFWQGDVRFLMEDIQALKPTLFCAVPRVYDRVYAGISSKISSGGALQSTLFQYAYNYKLGYLEKGLPQDKAAPLFDKLVFDKIKQALGGRVRLLLSGAAPLPRHVEEFLRVTFGATMSQGYGLTESCGGCFTAISNVFSMMGTIGVPMTTIESRLESVPEMGYDALSSEARGEICLRGNTLFSGYHKHQDLTEEVMVDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENIENKYLQCPLITSIWVYGNSFESFLVAVVVPERKALEDWAVKHNSTDDFKSLCENPKARKYILDELNNTGQKHQLRGFELLKAVHLEPIPFDMERDLITPTFKLKRPQLLKQYKECIDQLYKEAKA*
>Glyma12g05140.2 sequence type=predicted peptide gene model=Glyma12g05140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEIALEVVEDTTTRCPSNPMLGRRQKSDSKVGPYEWITYQEAYDAAIRMGSAMRSRDVNPGDRCGIYGSNCPEWIIAMEACNSYAVTYVPLYDTLGPNAVEFIINHAEVSIAFVQDNKFPSVLSCLDRCSSLKTVVSFGNVSTTQKKEAEELGASCFSWEEFLQLGNMDLDLPLKNKTNICTIMYTSGTTGEPKGVIIKNEAFMTQVLSIDQILNLTDRVGTEDDVYFSFLPLAHVYDQIMETYCIYKGSSIGFWQGDVRFLMEDIQALKPTLFCAVPRVYDRVYAGISSKISSGGALQSTLFQYAYNYKLGYLEKGLPQDKAAPLFDKLVFDKIKQALGGRVRLLLSGAAPLPRHVEEFLRVTFGATMSQGYGLTESCGGCFTAISNVFSMMGTIGVPMTTIESRLESVPEMGYDALSSEARGEICLRGNTLFSGYHKHQDLTEEVMVDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENIENKYLQCPLITSIWVYGNSFESFLVAVVVPERKALEDWAVKHNSTDDFKSLCENPKARKYILDELNNTGQKHQLRGFELLKAVHLEPIPFDMERDLITPTFKLKRPQLLKQYKECIDQLYKEAKA*