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Report for Sequence Feature Glyma12g05080

Feature Type:gene_model
Chromosome:Gm12
Start:3396411
stop:3397822
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G66580AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50800.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26572724-26573194 FORWARD LENGTH=156 SoyBaseE_val: 7.00E-18ISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1LQ74UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LQ74_SOYBN SoyBaseE_val: 9.00E-100ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g05080 not represented in the dataset

Glyma12g05080 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma11g12990 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g046800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma12g05080.1   sequence type=CDS   gene model=Glyma12g05080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAACATTTGTGCATCAACTCAATACGCAAGCAAAGGTGGAAACCATAGTTGGCAATCCACGGTGAACATAGTTCACATAGATGGAAAGTTGCAACAATTGAAGGAGCCTATTAAGGCATGGCAAGTGTTGTCTGAGAACCCAAACTGCTACATATGCTGCTCAGAATCCATGTATGTTGGGTCACCAATGCCTCCTTTGGCTCCAAGTGAAGAGCTTCAATTGGGTCTCATATACTTCCTTGTTCCAATTCCCAAATCACGAATCCCACTTTCTCTGCAGGACTTGGGAGCACTAGCCATCAAGGCTAATGCAGCTCTTGCTGCTGCAACACCTAATTATAGCTACCCTATCTTAAAACCCAATTCACAAAAAAAGTTCCGTACGCACCCTACTCTTTCTAACGTTTCTCTGGTGTATTCCCATTAG

>Glyma12g05080.1   sequence type=predicted peptide   gene model=Glyma12g05080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNICASTQYASKGGNHSWQSTVNIVHIDGKLQQLKEPIKAWQVLSENPNCYICCSESMYVGSPMPPLAPSEELQLGLIYFLVPIPKSRIPLSLQDLGALAIKANAALAAATPNYSYPILKPNSQKKFRTHPTLSNVSLVYSH*







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