Report for Sequence Feature Glyma12g04990
Feature Type: gene_model
Chromosome: Gm12
Start: 3318314
stop: 3330589
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma12g04990
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G18860 AT
Annotation by Michelle Graham. TAIR10: transducin family protein / WD-40 repeat family protein | chr3:6501774-6508352 FORWARD LENGTH=760
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0009506 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
KOG0301
KOG
Phospholipase A2-activating protein (contains WD40 repeats)
JGI ISS
PTHR19849 Panther
PHOSPHOLIPASE A-2-ACTIVATING PROTEIN
JGI ISS
PF00400 PFAM
WD domain, G-beta repeat
JGI ISS
PF08324 PFAM
PUL domain
JGI ISS
PF09070 PFAM
PFU (PLAA family ubiquitin binding)
JGI ISS
UniRef100_B9RZC7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Phospholipase A-2-activating protein, putative n=1 Tax=Ricinus communis RepID=B9RZC7_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1LQ62 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LQ62_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma12g04990
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma12g04990
Paralog Evidence Comments
Glyma11g12850 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma12g04990 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.12g045800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma12g04990
Coding sequences of Glyma12g04990
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g04990.1 sequence type=CDS gene model=Glyma12g04990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGACATTGATTTCAAAGAATACCAGTTGCGCTGCGAGCTTCGCGGCCACGAAGACGACGTTCGCGGAATATGCGTGTGCGGCAGCAAGGGTATAGCGACTTCGTCAAGGGACCGGACCGTTAGGTTGTGGTCTTTGGACGACAACCGCAGGTTCGCGAGTTCCAAGATTCTTTTGGGCCACACAAGCTTCGTGGGTCCCTTGGCATGGATTCCTCCGAATTCGGATCTCCCGCATGGTGGGGTCGTGTCTGGCGGCATGGACACACTCGTGTGTGTCTGGGACTTGAAGACTGGTGAGAAGGTTCACACTCTCAAGGGCCATCAGCTGCAGGTCACTGGCATTGCCTTTGATGATGGGGATGTTGTCTCCTCTTCTGTTGATTGTACCTTAAAACGGTGGAGGAATGGACAATCTGTAGAGTCGTGGGAGGCTCATAAGGCACCGGTCCAAACTGTCATAAAGCTGCCCTCAGGAGAGCTTGTTACAGGTTCAAGTGACACTACTTTAAAGCTTTGGAGAGGAAAAACTTGCTTGCACACCTTTCAAGGACATTCAGATACAGTTCGAGGCTTGTCTGTGATGTCTGGTCTTGGAATCCTTTCTGCATCCCATGATGGTTCTCTCAGATTATGGGCAGTAAGTGGTGAAGTGCTAATGGAGATGGTTGGTCATACTGCTATTGTTTATTCAGTTGATTCACATGCATCAGGACTTATTGTCAGTGGTAGTGAAGACCGTTTTGCCAAAGTTTGGAAAGATGGAGTTTGTGTTCAGAGCATAGAGCATCCTGGTTGCGTTTGGGATGCAAAATTTATGGAAAATGGTGATATTGTGACAGCATGTTCAGATGGAGTAGTACGCATTTGGACCATAGATCAGGATAATGTTGCTGACCAGCTAGAGCTTGAGTTATACACTTCGCAACTTTCTGAATACAAATCTAGTAGAAAGAGGGTTGGAGGATTGAAACTGGAAGAGTTACCAGGCTTGGAGGCACTGAAGATCCCAGGAACTACTGATGGCCAGACAAAAGTAGTCAGAGAGGGGGATAATGGGGTGGCATATGGATGGAACATGAAAGAACAAAAGTGGGATAAAATTGGTGAAGTAGTTGATGGACCAGAGGAATCAAATCGTCAATTTTTTGACGGTATTCAGTATGATTATGTGTTTGATGTGGATATTGGAGATGGTATGCCTACCCGTAAGTTGCCATACAATCGATCAGATAATCCATATGATGTTGCTGATAAATGGCTACTCAAGGAGAATCTTCCTCTTTCTTTTCGTGAGCAAATTGTACAGTTTATTCTTCAAAATACTGGACAAAACAATATTACTTTTGATGCTTCATTTCGTGATCCCTTCACTGGCTCCCATGCTTATGTACCAGGACAACCTTCACGCATGTCTGATATATCTGCAAAACCTACTTTCAAGCATATTCCTAAGAAAGGAATGCTTGTTTTCGATGCAGCTCAGTTTGACGGGATCCTTAAAAAGATTACTGAGTTCAATAATGCTTTACAATCTGACCAGGAAAAGCAGAACTTGTCTTTGACTGAGCTCAATGTTTCCAGACTGGGTGCCATTGTTAAAATTCTGAAAGATACTTCACATTATCATTCTAGTAAATTTGCAGACTCTGATATAGCTTTGTTACTGAATCTGCTTCGGTCGTGGCCAATCGCAATGATTTTTCCTGTCATTGATATTGTAAGGATGCTAGTTCTTCATCCTGATGGGGCTGTTTTACTTCACAAGCATTTTGAAGCAGAAAATGACATACTAATGGAAGTGATTAAGAAAGTCACTGTAAATCCAACAATCCCTGCAAATCTGTTGACCAGCATTCGTGTTGTAACTAATCTCTTCAGGAATTTGTGCTACTACAACTGGTTGCAAAAACATCGTAGTGAGATTCTTGATGCTTTCTCAAGTTGTAGTTCATCTCCAAACAAGAATTTGCAGTTGTCATACTCTACCTTGTTACTAAATTATGCGGTGCTATTAATTGAAACAAAGGATCAAGAAGGTCAATCTCAAGTTCTATCAGCAGCTCTTGAGATTGCCGAGGATGAAAATGTTGAAGTCGACCCCAAATTTCGTGCTTTAGTTGCTGTTGGATCACTGATGCTTGAAGGTCTTGTCAGAAAAACAGCACTGGATTTTGATGTTGTGAACATTGCAAAAGCAGCCAAGGGTTCTAAGGAAGCCAAGATTGCTGAAGTCGGATCTGACATTGAGCTGTTAACAAAGCAGAGCTGA
Predicted protein sequences of Glyma12g04990
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma12g04990.1 sequence type=predicted peptide gene model=Glyma12g04990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDIDFKEYQLRCELRGHEDDVRGICVCGSKGIATSSRDRTVRLWSLDDNRRFASSKILLGHTSFVGPLAWIPPNSDLPHGGVVSGGMDTLVCVWDLKTGEKVHTLKGHQLQVTGIAFDDGDVVSSSVDCTLKRWRNGQSVESWEAHKAPVQTVIKLPSGELVTGSSDTTLKLWRGKTCLHTFQGHSDTVRGLSVMSGLGILSASHDGSLRLWAVSGEVLMEMVGHTAIVYSVDSHASGLIVSGSEDRFAKVWKDGVCVQSIEHPGCVWDAKFMENGDIVTACSDGVVRIWTIDQDNVADQLELELYTSQLSEYKSSRKRVGGLKLEELPGLEALKIPGTTDGQTKVVREGDNGVAYGWNMKEQKWDKIGEVVDGPEESNRQFFDGIQYDYVFDVDIGDGMPTRKLPYNRSDNPYDVADKWLLKENLPLSFREQIVQFILQNTGQNNITFDASFRDPFTGSHAYVPGQPSRMSDISAKPTFKHIPKKGMLVFDAAQFDGILKKITEFNNALQSDQEKQNLSLTELNVSRLGAIVKILKDTSHYHSSKFADSDIALLLNLLRSWPIAMIFPVIDIVRMLVLHPDGAVLLHKHFEAENDILMEVIKKVTVNPTIPANLLTSIRVVTNLFRNLCYYNWLQKHRSEILDAFSSCSSSPNKNLQLSYSTLLLNYAVLLIETKDQEGQSQVLSAALEIAEDENVEVDPKFRALVAVGSLMLEGLVRKTALDFDVVNIAKAAKGSKEAKIAEVGSDIELLTKQS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
