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Report for Sequence Feature Glyma12g04920
Feature Type: gene_model
Chromosome: Gm12
Start: 3259161
stop: 3262114
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma12g04920
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G36720 AT
Annotation by Michelle Graham. TAIR10: HVA22-like protein K | chr4:17307769-17309668 FORWARD LENGTH=200
SoyBase E_val: 2.00E-70 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005575 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cellular component
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR12300 Panther
HVA22-LIKE PROTEINS
JGI ISS
PTHR12300:SF12 Panther
HVA22-LIKE PROTEIN
JGI ISS
PF03134 PFAM
TB2/DP1, HVA22 family
JGI ISS
UniRef100_I1LQ54 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LQ54_SOYBN
SoyBase E_val: 8.00E-134 ISS
UniRef100_Q6NLY8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: HVA22-like protein k n=1 Tax=Arabidopsis thaliana RepID=HA22K_ARATH
SoyBase E_val: 1.00E-67 ISS
Expression Patterns of Glyma12g04920
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma12g04920
Paralog Evidence Comments
Glyma11g12740 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma12g04920 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.12g044900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma12g04920
Transcripts of Glyma12g04920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g04920.2 sequence type=transcript gene model=Glyma12g04920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AAACAAATCTTGCATTGTGTCTTTAGGGATGATGTTGAAATCCCTAACCTAAAATTTCCCTCCCTGATGGCTTCACCGGAGCTTGGGTTGAGACTGCTCCTTTCACCCGTTACTTCCGACCTTCTTCTCCGCACAGCATGCTGTTCTATAGGGCTTGCGCTTCCCGTATATTCCACGTTTAAAGCTATTGAGAACAATGACCCATATGAGCAACAAAGGTGCCTATTGTATTGGGCAGCTTATGGATCTTTTAGTGCTGCAGAAATGTTTGCTGAAAAATTACTTTCCTGGATTCCACTCTATTATCACATGAAGTTTGCATTTCTTGTTTGGCTACAGCTTCCCACTCTTGATGGTGCAAGACAACTGTATTCTAGTCACTTGCGTCCATTCCTGTTGAAGCATCAAGCTAGAATGGATCTGATTGTTGAATTTGTGTATGGTGCAATGAGTAAAATTATTAGTGCATACCAACCAGAATTAGAGTTTGCAAGAACTCTTGCAGTGAAATTTTTAATGACAGCCACTCAGATGGTTAGGAATCTCATTCATCCAGTTGGGAGGGAGTCAAATGGCATTGAACCCCAAAAGAGGCAGGTTTCAGAATCAGAAGAAGATTAATACATGTTTTTTTTTCTCATTACAACAATAAAGTCTTATCCAACTAAGTGAGATCAATTACATGGATCACATGACGTCATTTGACATAGTTAATTATTGGACAAAATTAGGTTGGCTAGTTTTTAATGAATGAATGTAATGATTTGCACGTGGTGCGGAGTTTTAATTATTAGTTCTACTAAAGTTTCTAGTTTTGTTTATATTCTTGATTTCCTCTCGCTATACATAGGAAATAGACATATTTGATGTAAATACTAATTTTCCTAGCAGTTGTCTTGGGAGTATAGTATTATAGTACATAGTTAGGACCACGTTTATGCTTACTGACCTGTAAGCATCGAACAACCATATGATTATAATTTATGCATTTTATGGTGGTGATTTTCGACAAACAGTCTTGTGAATTTTTGAGGATTCATCATTTTTCTATTATTGT
>Glyma12g04920.3 sequence type=transcript gene model=Glyma12g04920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AAACAAATCTTGCATTGTGTCTTTAGGGATGATGTTGAAATCCCTAACCTAAAATTTCCCTCCCTGATGGCTTCACCGGAGCTTGGGTTGAGACTGCTCCTTTCACCCGTTACTTCCGACCTTCTTCTCCGCACAGCATGCTGTTCTATAGGGCTTGCGCTTCCCGTATATTCCACGTTTAAAGCTATTGAGAACAATGACCCATATGAGCAACAAAGGTGCCTATTGTATTGGGCAGCTTATGGATCTTTTAGTGCTGCAGAAATGTTTGCTGAAAAATTACTTTCCTGGATTCCACTCTATTATCACATGAAGTTTGCATTTCTTGTTTGGCTACAGCTTCCCACTCTTGATGGTGCAAGACAACTGTATTCTAGTCACTTGCGTCCATTCCTGTTGAAGCATCAAGCTAGAATGGATCTGATTGTTGAATTTGTGTATGGTGCAATGCCACTCAGATGGTTAGGAATCTCATTCATCCAGTTGGGAGGGAGTCAAATGGCATTGAACCCCAAAAGAGGCAGGTTTCAGAATCAGAAGAAGATTAATACATGTTTTTTTTTCTCATTACAACAATAAAGTCTTATCCAACTAAGTGAGATCAATTACATGGATCACATGACGTCATTTGACATAGTTAATTATTGGACAAAATTAGGTTGGCTAGTTTTTAATGAATGAATGTAATGATTTGCACGTGGTGCGGAGTTTTAATTATTAGTTCTACTAAAGTTTCTAGTTTTGTTTATATTCTTGATTTCCTCTCGCTATACATAGGAAATAGACATATTTGATGTAAATACTAATTTTCCTAGCAGTTGTCTTGGGAGTATAGTATTATAGTACATAGTTAGGACCACGTTTATGCTTACTGACCTGTAAGCATCGAACAACCATATGATTATAATTTATGCATTTTATGGTGGTGATTTTCGACAAACAGTCTTGTGAATTTTTGAGGATTCATCATTTTTCTATTATTGT
Coding sequences of Glyma12g04920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g04920.1 sequence type=CDS gene model=Glyma12g04920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTCACCGGAGGTGCTTGGGTTGAGACTGCTCCTTTCACCCGTTACTTCCGACCTTCTTCTCCGCACAGCATGCTGTTCTATAGGGCTTGCGCTTCCCGTATATTCCACGTTTAAAGCTATTGAGAACAATGACCCATATGAGCAACAAAGGTGCCTATTGTATTGGGCAGCTTATGGATCTTTTAGTGCTGCAGAAATGTTTGCTGAAAAATTACTTTCCTGGATTCCACTCTATTATCACATGAAGTTTGCATTTCTTGTTTGGCTACAGCTTCCCACTCTTGATGGTGCAAGACAACTGTATTCTAGTCACTTGCGTCCATTCCTGTTGAAGCATCAAGCTAGAATGGATCTGATTGTTGAATTTGTGTATGGTGCAATGAGTAAAATTATTAGTGCATACCAACCAGAATTAGAGTTTGCAAGAACTCTTGCAGTGAAATTTTTAATGACAGCCACTCAGATGGTTAGGAATCTCATTCATCCAGTTGGGAGGGAGTCAAATGGCATTGAACCCCAAAAGAGGCAGGTTTCAGAATCAGAAGAAGATTAA
>Glyma12g04920.2 sequence type=CDS gene model=Glyma12g04920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTCACCGGAGCTTGGGTTGAGACTGCTCCTTTCACCCGTTACTTCCGACCTTCTTCTCCGCACAGCATGCTGTTCTATAGGGCTTGCGCTTCCCGTATATTCCACGTTTAAAGCTATTGAGAACAATGACCCATATGAGCAACAAAGGTGCCTATTGTATTGGGCAGCTTATGGATCTTTTAGTGCTGCAGAAATGTTTGCTGAAAAATTACTTTCCTGGATTCCACTCTATTATCACATGAAGTTTGCATTTCTTGTTTGGCTACAGCTTCCCACTCTTGATGGTGCAAGACAACTGTATTCTAGTCACTTGCGTCCATTCCTGTTGAAGCATCAAGCTAGAATGGATCTGATTGTTGAATTTGTGTATGGTGCAATGAGTAAAATTATTAGTGCATACCAACCAGAATTAGAGTTTGCAAGAACTCTTGCAGTGAAATTTTTAATGACAGCCACTCAGATGGTTAGGAATCTCATTCATCCAGTTGGGAGGGAGTCAAATGGCATTGAACCCCAAAAGAGGCAGGTTTCAGAATCAGAAGAAGATTAA
>Glyma12g04920.3 sequence type=CDS gene model=Glyma12g04920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTCACCGGAGCTTGGGTTGAGACTGCTCCTTTCACCCGTTACTTCCGACCTTCTTCTCCGCACAGCATGCTGTTCTATAGGGCTTGCGCTTCCCGTATATTCCACGTTTAAAGCTATTGAGAACAATGACCCATATGAGCAACAAAGGTGCCTATTGTATTGGGCAGCTTATGGATCTTTTAGTGCTGCAGAAATGTTTGCTGAAAAATTACTTTCCTGGATTCCACTCTATTATCACATGAAGTTTGCATTTCTTGTTTGGCTACAGCTTCCCACTCTTGATGGTGCAAGACAACTGTATTCTAGTCACTTGCGTCCATTCCTGTTGAAGCATCAAGCTAGAATGGATCTGATTGTTGAATTTGTGTATGGTGCAATGCCACTCAGATGGTTAGGAATCTCATTCATCCAGTTGGGAGGGAGTCAAATGGCATTGAACCCCAAAAGAGGCAGGTTTCAGAATCAGAAGAAGATTAATACATGTTTTTTTTTCTCATTACAACAATAA
Predicted protein sequences of Glyma12g04920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma12g04920.1 sequence type=predicted peptide gene model=Glyma12g04920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASPEVLGLRLLLSPVTSDLLLRTACCSIGLALPVYSTFKAIENNDPYEQQRCLLYWAAYGSFSAAEMFAEKLLSWIPLYYHMKFAFLVWLQLPTLDGARQLYSSHLRPFLLKHQARMDLIVEFVYGAMSKIISAYQPELEFARTLAVKFLMTATQMVRNLIHPVGRESNGIEPQKRQVSESEED*
>Glyma12g04920.2 sequence type=predicted peptide gene model=Glyma12g04920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASPELGLRLLLSPVTSDLLLRTACCSIGLALPVYSTFKAIENNDPYEQQRCLLYWAAYGSFSAAEMFAEKLLSWIPLYYHMKFAFLVWLQLPTLDGARQLYSSHLRPFLLKHQARMDLIVEFVYGAMSKIISAYQPELEFARTLAVKFLMTATQMVRNLIHPVGRESNGIEPQKRQVSESEED*
>Glyma12g04920.3 sequence type=predicted peptide gene model=Glyma12g04920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASPELGLRLLLSPVTSDLLLRTACCSIGLALPVYSTFKAIENNDPYEQQRCLLYWAAYGSFSAAEMFAEKLLSWIPLYYHMKFAFLVWLQLPTLDGARQLYSSHLRPFLLKHQARMDLIVEFVYGAMPLRWLGISFIQLGGSQMALNPKRGRFQNQKKINTCFFFSLQQ*