|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT4G04910 | AT | Annotation by Michelle Graham. TAIR10: AAA-type ATPase family protein | chr4:2489696-2495666 REVERSE LENGTH=742 | SoyBase | E_val: 5.00E-30 | ISS |
GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
PTHR23078 | Panther | VESICULAR-FUSION PROTEIN NSF | JGI | ISS | |
UniRef100_G7ZZ79 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Vesicle-fusing ATPase n=1 Tax=Medicago truncatula RepID=G7ZZ79_MEDTR | SoyBase | E_val: 4.00E-52 | ISS |
UniRef100_G7ZZ79 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Vesicle-fusing ATPase n=1 Tax=Medicago truncatula RepID=G7ZZ79_MEDTR | SoyBase | E_val: 4.00E-52 | ISS |
Glyma12g04905 not represented in the dataset |
Glyma12g04905 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.12g044800 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g04905.2 sequence type=transcript gene model=Glyma12g04905 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTTCAGCTAAATCAATGATTGGTCTACATGAGAGCACCAAATGTGCACAAATTATTAAGGTTTTTGAGTATTCATACAAGTCACCATTGAGTGTCATCATTCTTGATGACATTGAGAGATTATTGGAGTATGTGCCCATTGGTCCTCGATTTTCAAACTTGATTTCTCAAACACTACTTGTTTTGCTCAAACGGTTTCCTCCGAAGGTTTGTATTCATCCTCGTTCTTTCAGTTCCTTTCTGAAGCATATCGGTTATAAGTTCAAAAGCAGAACTAACAGGAATAGATCTGGATTCAGTGGGTGTGTGAAGATATACTGCCATGCTACTTTACTGTGCCAGTGGGCTAACCAAAATCTATCATATGATTTCCAAACTGTCAAATGAAAATTTTGATAATAATATTTTGCACCTTAATTTAATATAAAGGAAGCTGATCTCCTCATCCTTAAATTGCTCTCGTGGCTCCAGGAGCAAATATTGAATTCAAATTGTCGGTGTTAGTTGGGAACTAGGT
>Glyma12g04905.1 sequence type=CDS gene model=Glyma12g04905 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTTTCAACTTAGAAATAGAAAATTCTTTTCTAGCTGCTGATGTGAACCTTCAAGAGCTTGATGATCTCACCAAGCAAGTGGAGGAAGAGAACATTAAGGTTACAATGGATGACTTTTTGAATGCACTACATGAAGTGACTTCCGCATTAGGAGCTTCAACTGATGATCATGAAAGATGCAGTCTCCATGACATAGTGGAGTGTGCTAAATCAATGATTGGTCTACATGAGAGCACCAAATGTGCACAAATTATTAAGGTTTTTGAGTATTCATACAAGTCACCATTGAGTGTCATCATTCTTGATGACATTGAGAGATTATTGGAGTATGTGCCCATTGGTCCTCGATTTTCAAACTTGATTTCTCAAACACTACTTGTTTTGCTCAAACGGTTTCCTCCGAAGGTTTGTATTCATCCTCGTTCTTTCAGTTCCTTTCTGAAGCATATCGGTTATAAGTTCAAAAGCAGAACTAACAGGAATAGATCTGGATTCAGTGGGTGTGTGAAGATATACTGCCATGCTACTTTACTGTGCCAGTGGGCTAACCAAAATCTATCATATGATTTCCAAACTGTCAAATGA >Glyma12g04905.2 sequence type=CDS gene model=Glyma12g04905 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATTGGTCTACATGAGAGCACCAAATGTGCACAAATTATTAAGGTTTTTGAGTATTCATACAAGTCACCATTGAGTGTCATCATTCTTGATGACATTGAGAGATTATTGGAGTATGTGCCCATTGGTCCTCGATTTTCAAACTTGATTTCTCAAACACTACTTGTTTTGCTCAAACGGTTTCCTCCGAAGGTTTGTATTCATCCTCGTTCTTTCAGTTCCTTTCTGAAGCATATCGGTTATAAGTTCAAAAGCAGAACTAACAGGAATAGATCTGGATTCAGTGGGTGTGTGAAGATATACTGCCATGCTACTTTACTGTGCCAGTGGGCTAACCAAAATCTATCATATGATTTCCAAACTGTCAAATGA
>Glyma12g04905.1 sequence type=predicted peptide gene model=Glyma12g04905 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLFNLEIENSFLAADVNLQELDDLTKQVEEENIKVTMDDFLNALHEVTSALGASTDDHERCSLHDIVECAKSMIGLHESTKCAQIIKVFEYSYKSPLSVIILDDIERLLEYVPIGPRFSNLISQTLLVLLKRFPPKVCIHPRSFSSFLKHIGYKFKSRTNRNRSGFSGCVKIYCHATLLCQWANQNLSYDFQTVK* >Glyma12g04905.2 sequence type=predicted peptide gene model=Glyma12g04905 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIGLHESTKCAQIIKVFEYSYKSPLSVIILDDIERLLEYVPIGPRFSNLISQTLLVLLKRFPPKVCIHPRSFSSFLKHIGYKFKSRTNRNRSGFSGCVKIYCHATLLCQWANQNLSYDFQTVK*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||