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Report for Sequence Feature Glyma12g04905

Feature Type:gene_model
Chromosome:Gm12
Start:3253067
stop:3257040
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G04910AT Annotation by Michelle Graham. TAIR10: AAA-type ATPase family protein | chr4:2489696-2495666 REVERSE LENGTH=742 SoyBaseE_val: 5.00E-30ISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0017111GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity SoyBaseN/AISS
PTHR23078Panther VESICULAR-FUSION PROTEIN NSF JGI ISS
UniRef100_G7ZZ79UniRef Annotation by Michelle Graham. Best UniRef hit: Vesicle-fusing ATPase n=1 Tax=Medicago truncatula RepID=G7ZZ79_MEDTR SoyBaseE_val: 4.00E-52ISS
UniRef100_G7ZZ79UniRef Annotation by Michelle Graham. Most informative UniRef hit: Vesicle-fusing ATPase n=1 Tax=Medicago truncatula RepID=G7ZZ79_MEDTR SoyBaseE_val: 4.00E-52ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g04905 not represented in the dataset

Glyma12g04905 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g044800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma12g04905.2   sequence type=transcript   gene model=Glyma12g04905   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTTCAGCTAAATCAATGATTGGTCTACATGAGAGCACCAAATGTGCACAAATTATTAAGGTTTTTGAGTATTCATACAAGTCACCATTGAGTGTCATCATTCTTGATGACATTGAGAGATTATTGGAGTATGTGCCCATTGGTCCTCGATTTTCAAACTTGATTTCTCAAACACTACTTGTTTTGCTCAAACGGTTTCCTCCGAAGGTTTGTATTCATCCTCGTTCTTTCAGTTCCTTTCTGAAGCATATCGGTTATAAGTTCAAAAGCAGAACTAACAGGAATAGATCTGGATTCAGTGGGTGTGTGAAGATATACTGCCATGCTACTTTACTGTGCCAGTGGGCTAACCAAAATCTATCATATGATTTCCAAACTGTCAAATGAAAATTTTGATAATAATATTTTGCACCTTAATTTAATATAAAGGAAGCTGATCTCCTCATCCTTAAATTGCTCTCGTGGCTCCAGGAGCAAATATTGAATTCAAATTGTCGGTGTTAGTTGGGAACTAGGT

>Glyma12g04905.1   sequence type=CDS   gene model=Glyma12g04905   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTTTCAACTTAGAAATAGAAAATTCTTTTCTAGCTGCTGATGTGAACCTTCAAGAGCTTGATGATCTCACCAAGCAAGTGGAGGAAGAGAACATTAAGGTTACAATGGATGACTTTTTGAATGCACTACATGAAGTGACTTCCGCATTAGGAGCTTCAACTGATGATCATGAAAGATGCAGTCTCCATGACATAGTGGAGTGTGCTAAATCAATGATTGGTCTACATGAGAGCACCAAATGTGCACAAATTATTAAGGTTTTTGAGTATTCATACAAGTCACCATTGAGTGTCATCATTCTTGATGACATTGAGAGATTATTGGAGTATGTGCCCATTGGTCCTCGATTTTCAAACTTGATTTCTCAAACACTACTTGTTTTGCTCAAACGGTTTCCTCCGAAGGTTTGTATTCATCCTCGTTCTTTCAGTTCCTTTCTGAAGCATATCGGTTATAAGTTCAAAAGCAGAACTAACAGGAATAGATCTGGATTCAGTGGGTGTGTGAAGATATACTGCCATGCTACTTTACTGTGCCAGTGGGCTAACCAAAATCTATCATATGATTTCCAAACTGTCAAATGA

>Glyma12g04905.2   sequence type=CDS   gene model=Glyma12g04905   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTGGTCTACATGAGAGCACCAAATGTGCACAAATTATTAAGGTTTTTGAGTATTCATACAAGTCACCATTGAGTGTCATCATTCTTGATGACATTGAGAGATTATTGGAGTATGTGCCCATTGGTCCTCGATTTTCAAACTTGATTTCTCAAACACTACTTGTTTTGCTCAAACGGTTTCCTCCGAAGGTTTGTATTCATCCTCGTTCTTTCAGTTCCTTTCTGAAGCATATCGGTTATAAGTTCAAAAGCAGAACTAACAGGAATAGATCTGGATTCAGTGGGTGTGTGAAGATATACTGCCATGCTACTTTACTGTGCCAGTGGGCTAACCAAAATCTATCATATGATTTCCAAACTGTCAAATGA

>Glyma12g04905.1   sequence type=predicted peptide   gene model=Glyma12g04905   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLFNLEIENSFLAADVNLQELDDLTKQVEEENIKVTMDDFLNALHEVTSALGASTDDHERCSLHDIVECAKSMIGLHESTKCAQIIKVFEYSYKSPLSVIILDDIERLLEYVPIGPRFSNLISQTLLVLLKRFPPKVCIHPRSFSSFLKHIGYKFKSRTNRNRSGFSGCVKIYCHATLLCQWANQNLSYDFQTVK*

>Glyma12g04905.2   sequence type=predicted peptide   gene model=Glyma12g04905   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIGLHESTKCAQIIKVFEYSYKSPLSVIILDDIERLLEYVPIGPRFSNLISQTLLVLLKRFPPKVCIHPRSFSSFLKHIGYKFKSRTNRNRSGFSGCVKIYCHATLLCQWANQNLSYDFQTVK*







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