Glyma12g04890 - SoyBase

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Report for Sequence Feature Glyma12g04890

Feature Type:	gene_model
Chromosome:	Gm12
Start:	3241476
stop:	3244646
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g04890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G18830	AT	Annotation by Michelle Graham. TAIR10: polyol/monosaccharide transporter 5 \| chr3:6489000-6491209 REVERSE LENGTH=539	SoyBase	E_val: 0	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0031348	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response	SoyBase	N/A	ISS
GO:0043090	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid import	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0005351	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sugar:hydrogen symporter activity	SoyBase	N/A	ISS
GO:0005354	GO-mf	Annotation by Michelle Graham. GO Molecular Function: galactose transmembrane transporter activity	SoyBase	N/A	ISS
GO:0005355	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hexose phosphate transport	SoyBase	N/A	ISS
GO:0005365	GO-mf	Annotation by Michelle Graham. GO Molecular Function: myo-inositol transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015144	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015145	GO-mf	Annotation by Michelle Graham. GO Molecular Function: monosaccharide transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015148	GO-mf	Annotation by Michelle Graham. GO Molecular Function: D-xylose transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glycerol transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015575	GO-mf	Annotation by Michelle Graham. GO Molecular Function: mannitol transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015576	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sorbitol transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015591	GO-mf	Annotation by Michelle Graham. GO Molecular Function: D-ribose transmembrane transporter activity	SoyBase	N/A	ISS
GO:0022857	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transmembrane transporter activity	SoyBase	N/A	ISS
KOG0254	KOG	Predicted transporter (major facilitator superfamily)	JGI		ISS
PTHR24063	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24063:SF85	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00083	PFAM	Sugar (and other) transporter	JGI		ISS
UniRef100_I1LQ52	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LQ52_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q7XA50	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sorbitol-like transporter n=1 Tax=Glycine max RepID=Q7XA50_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g04890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g04890

Paralog	Evidence	Comments
Glyma11g12720	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g04890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g044700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g04890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g04890

Limit To All Plant Sequences

>Glyma12g04890.2   sequence type=transcript   gene model=Glyma12g04890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAATTTAGAAAGTGTGGAACAGGTATGGCACACACAGGGGAAATGATTTGAAGGTCGGAGAGAGAGAGAGAGTGAGTTGGGGATTCTACTTCGATCTATCATGTGAGACTCCTTAGTCTATGGTGACGAAAGCCTTTGGTCTATATAAGAACTCTAGCGGAACCTCACATTCATATGCCAAACTCCCACTACTCCTTAATTTCTCTCTTCACTTATCATCATACTTATATATTATATAACCCAATAATTAAATTAAATACATGTTAGCACTTTAACATTCCTTTCTCTAACCTCGTTCCCACTCTCATATTTTCCCTTCTGCTGATATTCAGCTAAACTAAGTCAATAAGATGACTCAGGGAAAGATAGTTGAAGCTGCAGAAGCTCATAAAACACTTGAGGATTTCGATCCTCCAAAGAAGCGCAAAAGGAACAAGTATGCTTTTGCTTGTGCTGTGCTGGCCTCCATGACTTCCATCTTGCTTGGCTACGGAGAAACTAACATAGTCAATGATGGACCGAAGTTCAGTTGAGGGGTGCACCTGACTTTGAGCGAAATACAAGAGTATATACTAGTCCTCCTGATCCGTCACTAAACACAGTTTCTTCCGCGCGGGCCGAAAATCGTAAAACTTATCCAGTTTACGTGGAAAAAGGAAAAAAGGAACAAGACTTTTGCGCACAAAACACATACAAAAAGATAAAGGAAAAGGAAAAGGAAAAGAAATAGCTAGTGGGACAAGAGTTTGCATGATTCTTTAATTAGAAAAAGGGAATAATCTCCGAGAACATTATTTTAAGTGAGACGTGGTATGTAATAATAAGTGTATTATTGTCACAGATATTGGTGTGATGAGTGGAGCAGCCTTGTACATAAAAAGGGACCTGAAAGTGTCGGATGTGCAAATCGAGATCCTGCTCGGAATCATCAACCTCTACTCTCTGATAGGCTCATGCCTCGCCGGCAGAACCTCCGACTGGATAGGTCGGCGTTACACGATTGTTTTCGCCGGCGCCATCTTCTTTGTCGGAGCACTTCTCATGGGTTTCTCCCCCAACTATTCCTTTCTCATGTTCGGCCGTTTCGTTGCCGGCATCGGCATCGGCTACGCCCTCATGATAGCCCCCGTCTACACCGCCGAGGTCTCCCCGGCCTCCTCTCGTGGCTTCCTCACATCCTTCCCCGAGGTTTTTATTAATGGAGGGATATTACTTGGATACATATCAAACTATGGATTTTCGAAGCTGACACTGAAGGTGGGATGGCGAATGATGCTTGGAGTGGGTGCAATTCCTTCGGTAGTCCTAACGGTGGGAGTGTTAGCGATGCCTGAGTCCCCAAGGTGGCTAGTGATGAGGGGTCGTTTGGGAGAGGCAAGAAAAGTGCTTAACAAAACCTCAGACAGCAGGGAAGAGGCCCAACTAAGGCTAGCCGAAATCAAACAAGCCGCAGGGATCCCCGAGAGTTGCAACGACGACGTCGTTCAGGTAACCAAACGAAGCACAGGTGAAGGCGTATGGAAAGAACTCTTCCTCTATCCAACGCCCCCAATTCGTCACATCGTAATCGCTGCCCTTGGGATTCACTTCTTCCAACAAGCGTCGGGCGTAGACGCCGTCGTTTTGTACAGCCCCAGGATCTTCGAGAAGGCTGGGATCAAAGACGACACGCATAAACTTCTTGCAACCGTGGCCGTTGGATTCGTCAAAACCGTTTTCATCTTGGCGGCTACTTTTACGTTGGACCGCGTGGGTCGTCGTCCGTTGTTGTTGTCTAGTGTCGGGGGCATGGTGCTCTCTCTCCTCACGCTCGCTATCAGCCTCACGATCATTGGTCACTCCGAGAGGAAACTAATGTGGGCCGTTGCATTGAGCATAGCCATGGTGTTGGCTTACGTGGCCACGTTCTCCATTGGTGCGGGTCCCATCACGTGGGTTTATAGTTCTGAGATCTTCCCGTTGAGGCTGCGGGCGCAGGGTGCGGCCGCGGGAGTTGTGGTGAACAGGACCACAAGTGGGGTTGTCTCAATGACTTTTTTGTCCCTCTCTGAAGCCATCACCATTGGTGGAGCTTTCTTCCTTTATTGTGGCATTGCTACCCTTGGGTGGATATTCTTTTACACCCTGCTTCCTGAGACTCGGGGTAAAACGCTCGAAGACATGGAAGGGTCTTTTGGTACTTTTAGGTCCAAATCCAACGCCACTAAGGGAGTAGAAAATGGGAATGGCCAAGTAGCACAAGTCCAGCTAGGGACCAATGTCCAAACATAGACAAATGAGCATTGGGACATCCAGTAATACTGTAGTAATTTCGTGTGTGCAAAAAAGAATTTTACAATAATTTCAATGAATGACAAAGGTTCAAAGGAAGAGAGTGTTTTTTTAACAGCTATTTTTATGATTTTTTTTCCTAGACGTATGTTTTTTTAACAGGAATGATATAGAGAGAGAAAGGAAGAAATGAGAACAAAAGTTAATGTTTGCAAGATAACTTTTAAATACTAATGTAATTATTATAATTTTTAAACAAGACTTTCAATTAAAAAATTATTGTAAATAATACAAACTAGCAAGCCAGAATGCGTTGTTTGAATGTGAGAAGTAGAGAAAAGAACTATATATGACGGAAACCGGAAAGAAGTGAGAAAAAGAGGAAATATATAGAAAATGAGTGGTCTTTTATATTTTTTTATTTACAAACAAAAAGAAGAGTTTAAGGTAAATAGTC

Coding sequences of Glyma12g04890

Limit To All Plant Sequences

>Glyma12g04890.1   sequence type=CDS   gene model=Glyma12g04890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTCAGGGAAAGATAGTTGAAGCTGCAGAAGCTCATAAAACACTTGAGGATTTCGATCCTCCAAAGAAGCGCAAAAGGAACAAGTATGCTTTTGCTTGTGCTGTGCTGGCCTCCATGACTTCCATCTTGCTTGGCTACGATATTGGTGTGATGAGTGGAGCAGCCTTGTACATAAAAAGGGACCTGAAAGTGTCGGATGTGCAAATCGAGATCCTGCTCGGAATCATCAACCTCTACTCTCTGATAGGCTCATGCCTCGCCGGCAGAACCTCCGACTGGATAGGTCGGCGTTACACGATTGTTTTCGCCGGCGCCATCTTCTTTGTCGGAGCACTTCTCATGGGTTTCTCCCCCAACTATTCCTTTCTCATGTTCGGCCGTTTCGTTGCCGGCATCGGCATCGGCTACGCCCTCATGATAGCCCCCGTCTACACCGCCGAGGTCTCCCCGGCCTCCTCTCGTGGCTTCCTCACATCCTTCCCCGAGGTTTTTATTAATGGAGGGATATTACTTGGATACATATCAAACTATGGATTTTCGAAGCTGACACTGAAGGTGGGATGGCGAATGATGCTTGGAGTGGGTGCAATTCCTTCGGTAGTCCTAACGGTGGGAGTGTTAGCGATGCCTGAGTCCCCAAGGTGGCTAGTGATGAGGGGTCGTTTGGGAGAGGCAAGAAAAGTGCTTAACAAAACCTCAGACAGCAGGGAAGAGGCCCAACTAAGGCTAGCCGAAATCAAACAAGCCGCAGGGATCCCCGAGAGTTGCAACGACGACGTCGTTCAGGTAACCAAACGAAGCACAGGTGAAGGCGTATGGAAAGAACTCTTCCTCTATCCAACGCCCCCAATTCGTCACATCGTAATCGCTGCCCTTGGGATTCACTTCTTCCAACAAGCGTCGGGCGTAGACGCCGTCGTTTTGTACAGCCCCAGGATCTTCGAGAAGGCTGGGATCAAAGACGACACGCATAAACTTCTTGCAACCGTGGCCGTTGGATTCGTCAAAACCGTTTTCATCTTGGCGGCTACTTTTACGTTGGACCGCGTGGGTCGTCGTCCGTTGTTGTTGTCTAGTGTCGGGGGCATGGTGCTCTCTCTCCTCACGCTCGCTATCAGCCTCACGATCATTGGTCACTCCGAGAGGAAACTAATGTGGGCCGTTGCATTGAGCATAGCCATGGTGTTGGCTTACGTGGCCACGTTCTCCATTGGTGCGGGTCCCATCACGTGGGTTTATAGTTCTGAGATCTTCCCGTTGAGGCTGCGGGCGCAGGGTGCGGCCGCGGGAGTTGTGGTGAACAGGACCACAAGTGGGGTTGTCTCAATGACTTTTTTGTCCCTCTCTGAAGCCATCACCATTGGTGGAGCTTTCTTCCTTTATTGTGGCATTGCTACCCTTGGGTGGATATTCTTTTACACCCTGCTTCCTGAGACTCGGGGTAAAACGCTCGAAGACATGGAAGGGTCTTTTGGTACTTTTAGGTCCAAATCCAACGCCACTAAGGGAGTAGAAAATGGGAATGGCCAAGTAGCACAAGTCCAGCTAGGGACCAATGTCCAAACATAG

>Glyma12g04890.2   sequence type=CDS   gene model=Glyma12g04890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGGAGCAGCCTTGTACATAAAAAGGGACCTGAAAGTGTCGGATGTGCAAATCGAGATCCTGCTCGGAATCATCAACCTCTACTCTCTGATAGGCTCATGCCTCGCCGGCAGAACCTCCGACTGGATAGGTCGGCGTTACACGATTGTTTTCGCCGGCGCCATCTTCTTTGTCGGAGCACTTCTCATGGGTTTCTCCCCCAACTATTCCTTTCTCATGTTCGGCCGTTTCGTTGCCGGCATCGGCATCGGCTACGCCCTCATGATAGCCCCCGTCTACACCGCCGAGGTCTCCCCGGCCTCCTCTCGTGGCTTCCTCACATCCTTCCCCGAGGTTTTTATTAATGGAGGGATATTACTTGGATACATATCAAACTATGGATTTTCGAAGCTGACACTGAAGGTGGGATGGCGAATGATGCTTGGAGTGGGTGCAATTCCTTCGGTAGTCCTAACGGTGGGAGTGTTAGCGATGCCTGAGTCCCCAAGGTGGCTAGTGATGAGGGGTCGTTTGGGAGAGGCAAGAAAAGTGCTTAACAAAACCTCAGACAGCAGGGAAGAGGCCCAACTAAGGCTAGCCGAAATCAAACAAGCCGCAGGGATCCCCGAGAGTTGCAACGACGACGTCGTTCAGGTAACCAAACGAAGCACAGGTGAAGGCGTATGGAAAGAACTCTTCCTCTATCCAACGCCCCCAATTCGTCACATCGTAATCGCTGCCCTTGGGATTCACTTCTTCCAACAAGCGTCGGGCGTAGACGCCGTCGTTTTGTACAGCCCCAGGATCTTCGAGAAGGCTGGGATCAAAGACGACACGCATAAACTTCTTGCAACCGTGGCCGTTGGATTCGTCAAAACCGTTTTCATCTTGGCGGCTACTTTTACGTTGGACCGCGTGGGTCGTCGTCCGTTGTTGTTGTCTAGTGTCGGGGGCATGGTGCTCTCTCTCCTCACGCTCGCTATCAGCCTCACGATCATTGGTCACTCCGAGAGGAAACTAATGTGGGCCGTTGCATTGAGCATAGCCATGGTGTTGGCTTACGTGGCCACGTTCTCCATTGGTGCGGGTCCCATCACGTGGGTTTATAGTTCTGAGATCTTCCCGTTGAGGCTGCGGGCGCAGGGTGCGGCCGCGGGAGTTGTGGTGAACAGGACCACAAGTGGGGTTGTCTCAATGACTTTTTTGTCCCTCTCTGAAGCCATCACCATTGGTGGAGCTTTCTTCCTTTATTGTGGCATTGCTACCCTTGGGTGGATATTCTTTTACACCCTGCTTCCTGAGACTCGGGGTAAAACGCTCGAAGACATGGAAGGGTCTTTTGGTACTTTTAGGTCCAAATCCAACGCCACTAAGGGAGTAGAAAATGGGAATGGCCAAGTAGCACAAGTCCAGCTAGGGACCAATGTCCAAACATAG

Predicted protein sequences of Glyma12g04890

Limit To All Plant Sequences

>Glyma12g04890.1   sequence type=predicted peptide   gene model=Glyma12g04890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTQGKIVEAAEAHKTLEDFDPPKKRKRNKYAFACAVLASMTSILLGYDIGVMSGAALYIKRDLKVSDVQIEILLGIINLYSLIGSCLAGRTSDWIGRRYTIVFAGAIFFVGALLMGFSPNYSFLMFGRFVAGIGIGYALMIAPVYTAEVSPASSRGFLTSFPEVFINGGILLGYISNYGFSKLTLKVGWRMMLGVGAIPSVVLTVGVLAMPESPRWLVMRGRLGEARKVLNKTSDSREEAQLRLAEIKQAAGIPESCNDDVVQVTKRSTGEGVWKELFLYPTPPIRHIVIAALGIHFFQQASGVDAVVLYSPRIFEKAGIKDDTHKLLATVAVGFVKTVFILAATFTLDRVGRRPLLLSSVGGMVLSLLTLAISLTIIGHSERKLMWAVALSIAMVLAYVATFSIGAGPITWVYSSEIFPLRLRAQGAAAGVVVNRTTSGVVSMTFLSLSEAITIGGAFFLYCGIATLGWIFFYTLLPETRGKTLEDMEGSFGTFRSKSNATKGVENGNGQVAQVQLGTNVQT*

>Glyma12g04890.2   sequence type=predicted peptide   gene model=Glyma12g04890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGAALYIKRDLKVSDVQIEILLGIINLYSLIGSCLAGRTSDWIGRRYTIVFAGAIFFVGALLMGFSPNYSFLMFGRFVAGIGIGYALMIAPVYTAEVSPASSRGFLTSFPEVFINGGILLGYISNYGFSKLTLKVGWRMMLGVGAIPSVVLTVGVLAMPESPRWLVMRGRLGEARKVLNKTSDSREEAQLRLAEIKQAAGIPESCNDDVVQVTKRSTGEGVWKELFLYPTPPIRHIVIAALGIHFFQQASGVDAVVLYSPRIFEKAGIKDDTHKLLATVAVGFVKTVFILAATFTLDRVGRRPLLLSSVGGMVLSLLTLAISLTIIGHSERKLMWAVALSIAMVLAYVATFSIGAGPITWVYSSEIFPLRLRAQGAAAGVVVNRTTSGVVSMTFLSLSEAITIGGAFFLYCGIATLGWIFFYTLLPETRGKTLEDMEGSFGTFRSKSNATKGVENGNGQVAQVQLGTNVQT*

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