SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G49320 | AT | Annotation by Michelle Graham. TAIR10: unknown seed protein like 1 | chr1:18246441-18247817 FORWARD LENGTH=280 | SoyBase | E_val: 2.00E-51 | ISS |
| GO:0048316 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed development | SoyBase | N/A | ISS |
| GO:0000326 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: protein storage vacuole | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF03181 | PFAM | BURP domain | JGI | ISS | |
| UniRef100_G7J6I5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: BURP domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J6I5_MEDTR | SoyBase | E_val: 8.00E-121 | ISS |
| UniRef100_I1LQ51 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LQ51_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g04880 not represented in the dataset |
Glyma12g04880 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g044600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g04880.1 sequence type=CDS gene model=Glyma12g04880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCCTACTCTTGCCCTTCAGTTTCTTTCTCTTTTCCTTTTGTTCATTATGAATGGCTATGTCATTGGAGCTAGAGATATGAAGGTAGAACTGCGAGATCAGAAGCAAGTGGAATGGTACAAAGCCACATCAGTGTCCAATGACGAGTCTAATGGCAAAGGGTACATAACCACTTCAGAATCCGCTGAACCTAATTACATAGCTTCATATACTGCTGCTAAACACAACCAAAACCATGAAAAACTCCATCAACCTTACATAGCTGGGTACACAAGTGATGCTGCCAACAAAGCCAATCAATACATAGCAGGGTATAGGACCAAAACTCATGATTCCAATACACCTTACATAGCTGGGTACACAACAACCAGTGCTTCCCACAAAGCCAATCAACCTAATTACCTTGCAGGGTATAGGACCAAAACCGATGATTCCAATACACCCTACATAGCTGGGTATACAACAACTAATGCCCATGTGGCAAATAATCAACCTAATTACATTGCAGGGTATAGGACTAGCACCACCCAAGAATCCAATACACCTTCTTACATTGCAGGGTATAGGACTAGCACCACCCAAGAATCCAATACACCTTCTTACATTGCAGGGTATAGGACTAGCACCACCCAAGAATCCAATACACCTTACATTGCAGGGTATAGGACTAGCACCACCCAAGAATCCAATACACCTTACATTGCAGGGTATAGGACTAGCACCACCCAAGAATCCAATACACCTTACATTGCAGGGTATAGGACTAGAACCACCCATGATCCTAATGCACCTTACATAGCTGGGTACACAACAACTAGTGCCAAGAAAGCTCCAAAAGGGTCATCTCATGATGATACCACTGGACCTTACATAACCCAATATGGTGGACCCGGTCCCAAAAATGACCCAAAAGAATCTTCCAACTTGGACCATACAGAGGCTTTCAAGACAGGATTTTTCGCCTTGGATGATCTATATGTTGGGAATGTGATGACCCTCCAATTTCCAATTCAAGATGTTTCTCAATTCTTACCAAGAAAAGAGGCTGAGTCCATTCCTTTCTCAATCTCACAACTCCCCAGTGTTCTTCAACTCTTCTCAATCTCTGAAGATTCTCCTGAGGCCAATGCCATGAGAGACACACTTGAACAATGTGAAGCAGAACCCATCACAGGGGAGACCAAGATTTGTGCCACCTCTTTAGAGTCCATGCTTGAATTCATTGGCACAATCATTGGTTCAGAGACCAAGCATAATATTCTCACAACCACACTTCCCACAGCCTCAGGTGTCCCTCTACAAAAGTTCACCATTTTGGAAGTGTCTGAAGATATCAACGCTGCTAAATGGGTAGCTTGTCATCCCCTACCATATCCCTATGCCATTTACTATTGCCACTTCATAGCAACAGGGAGCAAGGTGTTCAAGGTCTCACTAGGTAGCGAGAATGGAGATGACAAAATTGAAGCTCTTGGCATTTGCCATTTGGACACATCTGATTGGAGCCCAAATCATATTATATTTAGGCAGCTTGGAATCAAGCCTGGGAAGGATGCAGTGTGCCACTTCTTCCCTATAAAACATCTTATGTGGGTTCCCAAGCCTTTACAAGCCACCATGTGA
>Glyma12g04880.1 sequence type=predicted peptide gene model=Glyma12g04880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPTLALQFLSLFLLFIMNGYVIGARDMKVELRDQKQVEWYKATSVSNDESNGKGYITTSESAEPNYIASYTAAKHNQNHEKLHQPYIAGYTSDAANKANQYIAGYRTKTHDSNTPYIAGYTTTSASHKANQPNYLAGYRTKTDDSNTPYIAGYTTTNAHVANNQPNYIAGYRTSTTQESNTPSYIAGYRTSTTQESNTPSYIAGYRTSTTQESNTPYIAGYRTSTTQESNTPYIAGYRTSTTQESNTPYIAGYRTRTTHDPNAPYIAGYTTTSAKKAPKGSSHDDTTGPYITQYGGPGPKNDPKESSNLDHTEAFKTGFFALDDLYVGNVMTLQFPIQDVSQFLPRKEAESIPFSISQLPSVLQLFSISEDSPEANAMRDTLEQCEAEPITGETKICATSLESMLEFIGTIIGSETKHNILTTTLPTASGVPLQKFTILEVSEDINAAKWVACHPLPYPYAIYYCHFIATGSKVFKVSLGSENGDDKIEALGICHLDTSDWSPNHIIFRQLGIKPGKDAVCHFFPIKHLMWVPKPLQATM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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