Glyma12g04865 - SoyBase

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Report for Sequence Feature Glyma12g04865

Feature Type:	gene_model
Chromosome:	Gm12
Start:	3225167
stop:	3229969
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g04865

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G11750	AT	Annotation by Michelle Graham. TAIR10: CLP protease proteolytic subunit 6 \| chr1:3967609-3969535 FORWARD LENGTH=271	SoyBase	E_val: 6.00E-143	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0009073	GO-bp	Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process	SoyBase	N/A	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0009902	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast relocation	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0016226	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0034660	GO-bp	Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process	SoyBase	N/A	ISS
GO:0035304	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation	SoyBase	N/A	ISS
GO:0042793	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009532	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid stroma	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplastic endopeptidase Clp complex	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0004252	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity	SoyBase	N/A	ISS
PTHR10381	Panther	PROTEASE FAMILY S14 CLPP PROTEASE	JGI		ISS
PF00574	PFAM	Clp protease	JGI		ISS
UniRef100_I1LJF6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP-dependent Clp protease proteolytic subunit n=1 Tax=Glycine max RepID=I1LJF6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI000233D325	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D325 related cluster n=1 Tax=unknown RepID=UPI000233D325	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g04865

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g04865 not represented in the dataset	Glyma12g04865 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g04865

Paralog	Evidence	Comments
Glyma11g12700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g04865 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g044500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g04865

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g04865

Limit To All Plant Sequences

>Glyma12g04865.2   sequence type=transcript   gene model=Glyma12g04865   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACAGAACCATTAACCTCTGTGGGATCGAATAGAAGATTGGTATCCCTGTGCCACCTAGTTTCGGAGTTTCAACATTCAACAATGGTACCTCAAGCTTTGTCAGTGCCTGCGAGTTCCAGCTTGGCTATCGCTTCTCGCACCAGAAGTCCCTCCCACCTCGTATTTTCTCAAAGAAACCCGTGCTCGATAGCTTCTTCCTTGCCAAACCCATATGGCCATTCATCGGAAGTTGGGTTATCAAGTAAAAGCCGTGGCTTTCCTTTAAAACATGATGAGAAAAATATCCATGGTGCTAGTACAAGTTATGGTGCAATTGAAGCCAAGGGGAATCCGCCGATAACTCCAGCAGTGATGACTCCTGGAGGACCTCTTGATCTCACATCTGTTTTGTTCAGGAATCGTATAATCTTCATAGGTCAGCCAGTCAATTCACAAGTGGCTCAGAGAGTTATATCCCAGCTTGTGACTCTAGCTACTATAAATGAAAATGCAGACATACTGGTATATATAAATTGTCCTGGTGGAAGCACATATTCAGTGTTGGCAATTTATGATTGCATGTCTTGGATAAAGCCCAAGGTTGGTACCGTGTGTTTTGGAGTAGCTGCAAGCCAAGGAGCACTTCTCCTTGCTGGAGGTGAGAAGGGAATGCGCTATGCGATGCCAAATGCTCGCATAACGATACATCAACCACAGAGTGGATGTGGGGGTCATGTTGAGGATGTCAGACGCCAAGTGAATGAAGCTGTTCAATCTCGCCATAAAATTGACAAGATGTATAGTGTTTTTACTGGACAGCCATTAGAGAAGGTGCAACAGTACACAGAGAGGGACCGTTTTCTGTCTGTTTCTGAGGCTTTGGAGTTTGGTCTTATTGATGGTGTCCTGGAAACAGAGTATTGAATACATTTTATTTGCAGGATATATCTTAGAGGTTGAAAATGTTAATTCTTGTCAAATTGATATTGCAGAATTTCATCCATTAATGATAATTTGCAAATGTTGAGGATTGTATTTTCTTCTTAGTTCCTCAAAATTACTTTCATAGAATGGTGTAATTTTACTATTGTGGAGTTCAAGGTAGCTAACCCATGTCGTTTTGATTTGAGTACCTACTACCTAGGTGCTCGCATAGTAAACCCCCACGTGCAGTTTGCTGGGTGTTAGAACTGAAGGAGCCATCTGAGTTATGTTTCACCAGTAAACTGTTATTTTAGTCCCTGAATTTGTAAGGTTTTGTCACGTCAGTCCCTGAAACTAAGATGTCAAATAAGAGTGCAAAATGACAATGGCATTAATCTAAAATTAAAAAAAAACATATGACTTAGGTGATAATATTAACATATGTTTGGGGATTGATGAGAGTAAGTAGTGAAATTTAGAGACTTGTTTGACATTTTTCTTAGTTTCAGATATTAATATGACAATGCTCACCAAATTTAGGGATGAAAATGGCTTTTTATTTCGAGTTTCACTCATCCCACTGAGGGAGAGTACAATCTAATATCCCTTGAATGCAGATCATTCTTGCATATAAGGTGGTCGTTTCCCATGGGAGCCAAGTAATATTCACAGCCATTTGAATATTATTCAACATTCTACCTATTGCAGTGGAAGAAACTACCTCATCAAATTGTTGCAGCAAAAGGGATGACCTTGTGGGATGTGCATGATGATGATACATTCATCGTGGTGGTTGCAAAGTAGGCATCTACTATCCTGCTGCATCATTCTATGTTTACATTGCTAGGACTGAGTTTTTCAGATTTAATTCTCGTTTAAGTTCTTTTGGCAGAAAAAAAATAAAAATAATTGTGCATTAACATATTTTAATTCTTGTTTAAATTGCATAAGGATTGTCTACACACGAGATCTGCTGTATTTCTTGGTATCTAAAAGCTAGAATTTACTACAGAATATTAACCACAATTACAAGACCTACCGGATGATGTTGGGACATTAATGAAGCAAGCAAGCTTTAGACTAGATTTGTGTGAATAACCAAACAGGAAATAAACCCAACACGTTAATTACTAAGTTTATAGATTTCATTTTTTGTTGTTATTGTTGTTACTATCTATAATTTTAATAATAATTTTATTTATATTTTATTTTATAA

Coding sequences of Glyma12g04865

Limit To All Plant Sequences

>Glyma12g04865.1   sequence type=CDS   gene model=Glyma12g04865   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTACCTCAAGCTTTGTCAGTGCCTGCGAGTTCCAGCTTGGCTATCGCTTCTCGCACCAGAAGTCCCTCCCACCTCGTATTTTCTCAAAGAAACCCGTGCTCGATAGCTTCTTCCTTGCCAAACCCATATGGCCATTCATCGGAAGTTGGGTTATCAAGTAAAAGCCGTGGCTTTCCTTTAAAACATGATGAGAAAAATATCCATGGTGCTAGTACAAGTTATGGTGCAATTGAAGCCAAGGGGAATCCGCCGATAACTCCAGCAGTGATGACTCCTGGAGGACCTCTTGATCTCACATCTGTTTTGTTCAGGAATCGTATAATCTTCATAGGTCAGCCAGTCAATTCACAAGTGGCTCAGAGAGTTATATCCCAGCTTGTGACTCTAGCTACTATAAATGAAAATGCAGACATACTGGTATATATAAATTGTCCTGGTGGAAGCACATATTCAGTGTTGGCAATTTATGATTGCATGTCTTGGATAAAGCCCAAGGTTGGTACCGTGTGTTTTGGAGTAGCTGCAAGCCAAGGAGCACTTCTCCTTGCTGGAGGTGAGAAGGGAATGCGCTATGCGATGCCAAATGCTCGCATAACGATACATCAACCACAGAGTGGATGTGGGGGTCATGTTGAGGATGTCAGACGCCAAGTGAATGAAGCTGTTCAATCTCGCCATAAAATTGACAAGATGTATAGTGTTTTTACTGGACAGCCATTAGAGAAGGTGCAACAGTACACAGAGAGGGACCGTTTTCTGTCTGTTTCTGAGGCTTTGGAGTTTGGTCTTATTGATGGTGTCCTGGAAACAGAGTATTGA

>Glyma12g04865.2   sequence type=CDS   gene model=Glyma12g04865   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTACCTCAAGCTTTGTCAGTGCCTGCGAGTTCCAGCTTGGCTATCGCTTCTCGCACCAGAAGTCCCTCCCACCTCGTATTTTCTCAAAGAAACCCGTGCTCGATAGCTTCTTCCTTGCCAAACCCATATGGCCATTCATCGGAAGTTGGGTTATCAAGTAAAAGCCGTGGCTTTCCTTTAAAACATGATGAGAAAAATATCCATGGTGCTAGTACAAGTTATGGTGCAATTGAAGCCAAGGGGAATCCGCCGATAACTCCAGCAGTGATGACTCCTGGAGGACCTCTTGATCTCACATCTGTTTTGTTCAGGAATCGTATAATCTTCATAGGTCAGCCAGTCAATTCACAAGTGGCTCAGAGAGTTATATCCCAGCTTGTGACTCTAGCTACTATAAATGAAAATGCAGACATACTGGTATATATAAATTGTCCTGGTGGAAGCACATATTCAGTGTTGGCAATTTATGATTGCATGTCTTGGATAAAGCCCAAGGTTGGTACCGTGTGTTTTGGAGTAGCTGCAAGCCAAGGAGCACTTCTCCTTGCTGGAGGTGAGAAGGGAATGCGCTATGCGATGCCAAATGCTCGCATAACGATACATCAACCACAGAGTGGATGTGGGGGTCATGTTGAGGATGTCAGACGCCAAGTGAATGAAGCTGTTCAATCTCGCCATAAAATTGACAAGATGTATAGTGTTTTTACTGGACAGCCATTAGAGAAGGTGCAACAGTACACAGAGAGGGACCGTTTTCTGTCTGTTTCTGAGGCTTTGGAGTTTGGTCTTATTGATGGTGTCCTGGAAACAGAGTATTGA

Predicted protein sequences of Glyma12g04865

Limit To All Plant Sequences

>Glyma12g04865.1   sequence type=predicted peptide   gene model=Glyma12g04865   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVPQALSVPASSSLAIASRTRSPSHLVFSQRNPCSIASSLPNPYGHSSEVGLSSKSRGFPLKHDEKNIHGASTSYGAIEAKGNPPITPAVMTPGGPLDLTSVLFRNRIIFIGQPVNSQVAQRVISQLVTLATINENADILVYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNARITIHQPQSGCGGHVEDVRRQVNEAVQSRHKIDKMYSVFTGQPLEKVQQYTERDRFLSVSEALEFGLIDGVLETEY*

>Glyma12g04865.2   sequence type=predicted peptide   gene model=Glyma12g04865   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVPQALSVPASSSLAIASRTRSPSHLVFSQRNPCSIASSLPNPYGHSSEVGLSSKSRGFPLKHDEKNIHGASTSYGAIEAKGNPPITPAVMTPGGPLDLTSVLFRNRIIFIGQPVNSQVAQRVISQLVTLATINENADILVYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNARITIHQPQSGCGGHVEDVRRQVNEAVQSRHKIDKMYSVFTGQPLEKVQQYTERDRFLSVSEALEFGLIDGVLETEY*

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