SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G34430 | AT | Annotation by Michelle Graham. TAIR10: DNA-binding family protein | chr4:16461069-16464993 FORWARD LENGTH=983 | SoyBase | E_val: 0 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG1279 | KOG | Chromatin remodeling factor subunit and related transcription factors | JGI | ISS | |
| PTHR12802 | Panther | SWI/SNF COMPLEX-RELATED | JGI | ISS | |
| PTHR12802:SF4 | Panther | SWI/SNF COMPLEX-RELATED | JGI | ISS | |
| PF00249 | PFAM | Myb-like DNA-binding domain | JGI | ISS | |
| PF00569 | PFAM | Zinc finger, ZZ type, | JGI | ISS | |
| PF04433 | PFAM | SWIRM domain | JGI | ISS | |
| UniRef100_G7JG42 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: SWI/SNF complex subunit SMARCC1 n=1 Tax=Medicago truncatula RepID=G7JG42_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D75A | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D75A related cluster n=1 Tax=unknown RepID=UPI000233D75A | SoyBase | E_val: 0 | ISS |
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Glyma12g04840 not represented in the dataset |
Glyma12g04840 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g12640 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g044200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g04840.2 sequence type=CDS gene model=Glyma12g04840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGAGAAACGCCGCGACGCCGCTCCCTCCGCCGCCGATTCGCCGGCATCGGAGCCAGCAACGTCTCGCCGCCGCGCCGGAGCCAACAAGAGGAAGTTCGGCACCCTCAGCGCCTCCGGTTCCTCCTCCGCACCCTCCAAACGCGCCGCTCGCGACAAGGCTTCACCGCTCTTCCCTCCTGCCCCCCACAATGGTCCCCTCACCAGGGCCCGCCAAACCCCCAACAACCTCTCCGCCTCCTCTTCCGCCGCCGCTTCCGCTCCCGCCGCCGTCAAACGCTCCGAACGCGCCCACCCTTCCGCTGCTGAGTCCACGGCGCTGGCTGAGCAGCTCAAAAAGGAGAGCGAGTGGGAGACTCTCGAGGCCGCGATTGAAGCCGAATTCGAAGCTATCAGATCTCGCGGTGCCAATGCGCACGTGGTTCCCACCCACTGCGGTTGGTTTTCATGGTCATGTATTCATCCAATTGAGAAGCAAATGTTGCCTTCTTTCTTTAGTGGCAAGACTGAAAATCGGACTTCTGATGTATACATGGAGATAAGGAATTGGATAATGAAGAAGTTTCATTCAAATCCAAATGTACAAATTGAATTGAAAGATATGTCACAGCTTAATGTTGGAGACTCGGATGCCAGGCAAGAGGTAATGGAGTTTTTGGACTATTGGGGTTTAATTAACTTCCATCCATTCCCTTCAATGGATTCTTCTGTGGCCACTGCCAGTGATGATGGAGAAGCAGAAAAGAGTTTGTTGCTTGAAAAATTGTATCACTTTGAAACTCTCCAATTATGTCCACCTGTTCAAAGGTCTAGCCAAATGACTCCAGCTACGACCTCTGGCTTGTTTCCAGAGTCTACAATTGCTGAAGAGTTGGTGAAACAAGAGGGGCCAGCAGTTGAGATGCTTGAGTACCATTGCAACTCTTGTTCTGCTGATTGTTCTCGCAAACGTTACCATTGCCAGAAGCAGGCAGATTTTGATCTATGTACCGACTGCTTCAGTAATAGAAGATTTGGCTCTGGCATGTCTTCATTGGATTTTATACTCATGGAACCAGCTGAAGTTGCAGGGGTTAATGGTGGAAAGTGGACTGATCAGGAGACTCTCCTGCTCCTTGAAGCATTAGAACTGTATAAAGAAAACTGGAATGAAATTGCAGAACATGTTGGAACAAAAACAAAAGCTCAGTGCATATTGCACTTTGTTCAAATGCCAATTGAGGATACCTTTGTTGACTGTGATGATGATGTTGATGCTGGTTGCAAAGAAACTGCGGATCCAGTTGCAACAAAAAGTGACTCATCTATGGACAAAGATGCTTCAGAATGTATTGAGAATCATACTAGCGATGGCATCAAAGACAGTGAAAAAACTTCCAAAGCTGAAGATCTCGAAGTCAAAGTGAATCAGAAGGAGACTCCAAAGTTACAAGAAGGCAGTGATGAGAAAGCCAGCGAGGAAACTTCTAAATCAGAAGATGCTGTTAAGGTAAAGATTGATCAGGAAGCAGACAATGACTGTGCTATAAATGCTCTTAAGGAAGCATTTGCGGCTGTTGGTTATTCTCCTGGACCTGAAGGCCCTTCTTCATTTGCTGATGTGGGTAATCCTGTCATGGCACTGGCAACTTTTCTTGCACACTTGGTGGGTTCTGATGCGGCTGTTGCTTCAGCTCACAGCTCCATAAAATCCATGACAAGAAATTCTCCTGGCACCGAGCTTGCTGCAAGGTGTTGCTTTCTTCTAGAAGATCCGCCAGATAGCAAGAAGGAACCAACTAGTTCTGAGAGGGATTCTAAAAGTGAGGGAGACCAGGATGAAGTAAATGTAAACCAGGATAAATCAACGTTGGAGGATAAAGATTTACCAACTGATCACAATAATAAGAAAATTGAAAGTAATGCTTTAGAAGACAAGGGAAAGCCTGCTTCTGCAGATGATGGCGCCTCGGAAATACCCATTTCTTCAAAGGAACAAGCGGTGGTTAATAATGAATGTGGGCTTGACAAGTGTCATGATCTCAACAATGCAAAGCTACCCAATGATCAAGCACCTGGCACTCTGCATAATTCAGGTGGTTCAACATCCAAGGCTGAAATTCCATCTAGTTCTGACAAGGCTCAGGAGGAAACTTTAATTGAAGAACCTTGCCCTTCTGTAAAGGACAGGCATGTGTCTGATTCTCTTCCATCAGAGACATCAAAAGATGCTGAGATGGTTTCTGATGCTATTCCCTCAACTAAGAGCAAGCCTCAAAATCCAGAGTCTACAAATCCAGCTCATGAATCTCTAGAAACAACAGACTCAGTAATGGATGTGGATGGAGTTTCTAATTCCTTGCCATTGGAAAAGATTGACTCTCAGCCACTAATTACATCAAAATCATCCCAATGTAATGGGACAGAAAAGGATGTAGAAGTGATGTCACCTTCAAATCCAGTTAGATCAAATTCTAGTGCTGAAAATGGTCCAAATACAGGGGCAGGTAAAGATAATGCAGATAATGGAGCAAAAGTGGAAGATGATGGTACAAAGACTAAACAGGATAGCAGTTTTGAGAAAGTGAAACGTGCTGCTGTTTCTACACTTGCTGCAGCAGCAGTAAAAGCAAAACTTCTAGCAAATCAGGAAGAAGACCAAATTCGACAGCTTACTTCCTTGTTGATAGAAAAGCAGTTGCACAAGTTGGAAACAAAGTTGGCTTTTTTCAATGATGTGGAGAATGTGGTGATGAGGGCAAGGGAGCATGTAGAGCGATCACGGCATAAGCTTTATCATGAGCGTGCTTTGATAATTGCATCAAGGCTTGGTATACCACCTTCCTCATCTAGAGGTGTACCACCATCTATACCAACCAATAGAATTCCTACAAATATTGCAAACTCACTCCCAAGACCACAAATGATGATGAATCCACCAAGACCACTGATTTCTAGACCTGCAGGCACGGTAGCAACTATTCAAAACCCATTAACACCTTCAACTGCAGCAGGAAATTCAGTTCGGCCATCTAATCAGGAAAAGCTTTCTTCTGTTGGGACAAAATAA
>Glyma12g04840.2 sequence type=predicted peptide gene model=Glyma12g04840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEKRRDAAPSAADSPASEPATSRRRAGANKRKFGTLSASGSSSAPSKRAARDKASPLFPPAPHNGPLTRARQTPNNLSASSSAAASAPAAVKRSERAHPSAAESTALAEQLKKESEWETLEAAIEAEFEAIRSRGANAHVVPTHCGWFSWSCIHPIEKQMLPSFFSGKTENRTSDVYMEIRNWIMKKFHSNPNVQIELKDMSQLNVGDSDARQEVMEFLDYWGLINFHPFPSMDSSVATASDDGEAEKSLLLEKLYHFETLQLCPPVQRSSQMTPATTSGLFPESTIAEELVKQEGPAVEMLEYHCNSCSADCSRKRYHCQKQADFDLCTDCFSNRRFGSGMSSLDFILMEPAEVAGVNGGKWTDQETLLLLEALELYKENWNEIAEHVGTKTKAQCILHFVQMPIEDTFVDCDDDVDAGCKETADPVATKSDSSMDKDASECIENHTSDGIKDSEKTSKAEDLEVKVNQKETPKLQEGSDEKASEETSKSEDAVKVKIDQEADNDCAINALKEAFAAVGYSPGPEGPSSFADVGNPVMALATFLAHLVGSDAAVASAHSSIKSMTRNSPGTELAARCCFLLEDPPDSKKEPTSSERDSKSEGDQDEVNVNQDKSTLEDKDLPTDHNNKKIESNALEDKGKPASADDGASEIPISSKEQAVVNNECGLDKCHDLNNAKLPNDQAPGTLHNSGGSTSKAEIPSSSDKAQEETLIEEPCPSVKDRHVSDSLPSETSKDAEMVSDAIPSTKSKPQNPESTNPAHESLETTDSVMDVDGVSNSLPLEKIDSQPLITSKSSQCNGTEKDVEVMSPSNPVRSNSSAENGPNTGAGKDNADNGAKVEDDGTKTKQDSSFEKVKRAAVSTLAAAAVKAKLLANQEEDQIRQLTSLLIEKQLHKLETKLAFFNDVENVVMRAREHVERSRHKLYHERALIIASRLGIPPSSSRGVPPSIPTNRIPTNIANSLPRPQMMMNPPRPLISRPAGTVATIQNPLTPSTAAGNSVRPSNQEKLSSVGTK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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