SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G34450 | AT | Annotation by Michelle Graham. TAIR10: coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative | chr4:16471956-16476795 FORWARD LENGTH=886 | SoyBase | E_val: 0 | ISS |
| GO:0006094 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gluconeogenesis | SoyBase | N/A | ISS |
| GO:0006487 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation | SoyBase | N/A | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0007010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0010498 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005798 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi-associated vesicle | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0030117 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane coat | SoyBase | N/A | ISS |
| GO:0030126 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: COPI vesicle coat | SoyBase | N/A | ISS |
| GO:0005198 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural molecule activity | SoyBase | N/A | ISS |
| GO:0030276 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: clathrin binding | SoyBase | N/A | ISS |
| KOG1078 | KOG | Vesicle coat complex COPI, gamma subunit | JGI | ISS | |
| PTHR10261 | Panther | COATOMER GAMMA SUBUNIT | JGI | ISS | |
| PF01602 | PFAM | Adaptin N terminal region | JGI | ISS | |
| PF08752 | PFAM | Coatomer gamma subunit appendage domain | JGI | ISS | |
| UniRef100_I1LQ46 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Coatomer subunit gamma n=1 Tax=Glycine max RepID=I1LQ46_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LQ46 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Coatomer subunit gamma n=1 Tax=Glycine max RepID=I1LQ46_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g04820 not represented in the dataset |
Glyma12g04820 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g12610 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g044000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g04820.1 sequence type=CDS gene model=Glyma12g04820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCAGCCGCTCGTGAAGAAGGACGATGACCGCGACGACGAAGCTGAGTATTCTCCCTTTTTGGGAATTGAAAAGGGAGCTGTTCTTCAGGAGGCCAGGGTTTTTAATGACCCACAACTAGATGCTAGGAGATGTTCACAGGTTATCACAAAACTTTTATATCTACTGAATCAGGGAGAGACATTTACAAAGACCGAAGCCACAGAAGTTTTCTTTTCTGTAACTAAGCTTTTCCAGTCTCGGGATCTTGGGTTAAGGAGAATGGTCTACCTGATCATAAAGGAGCTCTCCCCTTCTGCAGATGAGGTTATCATCGTTACAAGCTCTCTCATGAAGGACATGAATAGTAAGACTGATATGTACAGGGCTAATGCTATTCGTGTCCTTTGTCGTATCACGGATGGAACTCTCCTTACTCAAATAGAGCGATATCTGAAACAGGCTATTGTAGACAAGAATCCAGTTGTTGCAAGTGCAGCCCTAGTTAGCGGCATTCATATACTCCAGACAAATCCCGAGATTGTAAAAAGATGGAGTAATGAGGTTCAGGAAGCTGTTCAATCAAGGGCAGCTCTTGTGCAATTTCATGCCCTGGCTTTGCTGCATCAGATACGGCAGAATGATCGACTCGCTGTTAGCAAGCTGGTTACAAGCTTAACCAGGGGAAATGTTCGCTCTCCTTTGGCTCAATGCCTTTTGGTCTGTTATACAAGTCAGGTAATTCGGGAGTCAGGAAATAATACACAATCAGGGGACCGCCCCTTCTATGATTATCTTGAGAGTTGCCTTCGTCACAAGTCAGAGATGGTGATTTTTGAAGCTGCCAGGGCAATTACAGAGCTCAATGGAGTAACTAGCCGAGAATTAACACCGGCAATTACTGTTCTTCAGCTTTTCTTAAGTTCATCTAAGCCAGTCTTGAGATTTGCCGCTGTCCGCACCTTGAACAAGGTGGCAATGACACATCCGATGGCAGTCACTAACTGCAATATTGATATGGAAAGTTTAATCTCTGACCAGAACAGAAGCATTGCCACACTTGCCATAACTACTCTATTGAAGACAGGAAATGAATCAAGTGTGGACCGTCTTATGAAGCAGATTACAAATTTCATGTCTGATATTGCTGATGAGTTCAAAATTGTTGTTGTTGAAGCAATAAGATCACTATGCTTGAAATTCCCTTTAAAATATAGATCTCTGATGAATTTCCTAAGTAACATTCTTAGGGAAGAAGGTGGCTTTGATTACAAGAAAGCAATTGTAGATTCAATTGTGATTCTTATTAGAGATATCCCTGATGCTAAGGAAAGTGGGTTGCTTCATCTTTGTGAGTTTATTGAAGATTGTGAATTCACTTATTTGTCCACACAGATACTGCACTTCCTGGGAGTTGAAGGACCAAAAACTTCTGACCCCAGCAAATATATTCGTTATATTTATAACAGAGTACATCTTGAGAATGCGACTGTTAGGGCCAGTGCTGTGAGCACATTGGCAAAGTTTGGTGCTGCTGTTGATGCACTAAAGCCCCGCATATTTGTACTGCTAAGGCGGTGTCTTTTTGATAGTGATGATGAGGTTCGTGACAGAGCAACACTTTATCTGAACACACTTGGAGGTGATGGTTCAGTTGTCGAGACAGATAAAGATGTGAAAGATTTCCTCTTTGGGTCATTTGTTATCCCGCTTGTCAATCTGGAGACTAGTTTGAAAAACTACGAGCCTTCAGAAGAGGCTTTTGACATTGATTCAGTGCCCAGGGAGGTCAAGTCTCAACCACTTGCAGAGAAGAAAGCCCCTGGTAAAAAGCCTACTGGTTTGGGTGCTCCTCCTAGTGGTCCCCCATCTACTGCAGATGCATATGAAAGGCTGCTTCTATCCATTCCCGAGTTTGCAAACTTTGGGAAGCTTTTTAAGTCTTCAGAACCTGTGGAGCTTACTGAAGCGGAGACAGAATATGCAGTTAATGTTGTTAAGCACATTTTTGATCGGCATGTTGTGTTTCAATACAACTGCACAAACACGATACCAGAGCAATTATTGGAAGATGTTATTGTGATTGTGGATGCATCGGAAGCAGAAGAGTTCTCTGAAGTGTTCTCAAAGCCTCTCAGATCTCTTCCTTATGATTCACCTGGGCAAACATTTGTGGCTTTTGAGAAGCCTGAGGGATTGCCAATTGCTGGAAAATTTTCGAATGTTCTGAAATTTATTGTTAAAGAGGTTGACCCAACCACTGGTGAGACAGAAGATGATGGTGTTGAAGATGAATACCAACTGGAGGATTTGGAGGTTGTCACAGCAGACTACATATTGAAAGTGGGGGTGTCTAATTTCAGGAGTGCATGGGAAAGCATGGGCCCTGACTGTGAGCGAGTGGATGAATATGGTCTTGGCCCCAGGGAGAATTTGGCTGAAGCTGTAAATACCGTCATTAATCTTCTTGGGATGCAGCCTTGTGAGGGAACCGAGGTAGTCCCACCCAATTCAAGGTCACACACATGCTTGTTGTCAGGTGTATTCATAGGAAATGTGAAGGTTCTTGTGCGGTTGTCTTTTGGACTTGATGGTCCAAAGGATGTTGCGATGAAACTTGCTGTCAGATCCGAGGATGAAACTGTTAGCGATACCATCCATGAGATTGTGGCTAGCGGCTAG
>Glyma12g04820.1 sequence type=predicted peptide gene model=Glyma12g04820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAQPLVKKDDDRDDEAEYSPFLGIEKGAVLQEARVFNDPQLDARRCSQVITKLLYLLNQGETFTKTEATEVFFSVTKLFQSRDLGLRRMVYLIIKELSPSADEVIIVTSSLMKDMNSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHILQTNPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGNVRSPLAQCLLVCYTSQVIRESGNNTQSGDRPFYDYLESCLRHKSEMVIFEAARAITELNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMTHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFDYKKAIVDSIVILIRDIPDAKESGLLHLCEFIEDCEFTYLSTQILHFLGVEGPKTSDPSKYIRYIYNRVHLENATVRASAVSTLAKFGAAVDALKPRIFVLLRRCLFDSDDEVRDRATLYLNTLGGDGSVVETDKDVKDFLFGSFVIPLVNLETSLKNYEPSEEAFDIDSVPREVKSQPLAEKKAPGKKPTGLGAPPSGPPSTADAYERLLLSIPEFANFGKLFKSSEPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLEDVIVIVDASEAEEFSEVFSKPLRSLPYDSPGQTFVAFEKPEGLPIAGKFSNVLKFIVKEVDPTTGETEDDGVEDEYQLEDLEVVTADYILKVGVSNFRSAWESMGPDCERVDEYGLGPRENLAEAVNTVINLLGMQPCEGTEVVPPNSRSHTCLLSGVFIGNVKVLVRLSFGLDGPKDVAMKLAVRSEDETVSDTIHEIVASG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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