SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G39280 | AT | Annotation by Michelle Graham. TAIR10: phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative | chr4:18281641-18284831 REVERSE LENGTH=485 | SoyBase | E_val: 0 | ISS |
| GO:0006418 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA aminoacylation for protein translation | SoyBase | N/A | ISS |
| GO:0006432 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phenylalanyl-tRNA aminoacylation | SoyBase | N/A | ISS |
| GO:0009165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0043039 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA aminoacylation | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0000049 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: tRNA binding | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0004812 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aminoacyl-tRNA ligase activity | SoyBase | N/A | ISS |
| GO:0004826 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phenylalanine-tRNA ligase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG2784 | KOG | Phenylalanyl-tRNA synthetase, beta subunit | JGI | ISS | |
| PTHR11538 | Panther | PHENYLALANYL-TRNA SYNTHETASE RELATED | JGI | ISS | |
| PTHR11538:SF15 | Panther | PHENYLALANYL-TRNA SYNTHETASE | JGI | ISS | |
| PF01409 | PFAM | tRNA synthetases class II core domain (F) | JGI | ISS | |
| UniRef100_G7JG63 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phenylalanyl-tRNA synthetase beta subunit n=1 Tax=Medicago truncatula RepID=G7JG63_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LQ36 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LQ36_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g04730 not represented in the dataset |
Glyma12g04730 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g12530 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g043200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g04730.2 sequence type=CDS gene model=Glyma12g04730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGTGATGCGGAAGACGAAGAGAAGACAAACGGCGTCGTTGAGCTCTTGACGAAGCTTCTAGAACGATTAGCGAAGAAGGACCTTGAAGCCAACCTCACCGCGGAAGCCATTATGCTTGAACCCCCGCTCTCGCTAAACTTGTTGTTTCTAAACGCTGTGTCTTCTACTGTGCTGTGCGGCGAAGCAATGGCGGAAGAAGCAATTCTGGGATACCTAGAGAAGAACGATGAGATTAAAGACTCGGGTGAATTCGCAGCTGAATGCGGCATTGACCACAACGAGATCGTGAATGTGGTTAAGAGCTTGCACGGTTTCAGATACGTTGATGCGCAAGATATTAAGAGAGAAACATGGGTACTCACTGATGAAGGGAAAACGTATGCTACTGTAGGATCCCCTGAAGTTCAACTTTTTTTGGCCGTTCCTCAAGAGGGTATCTCTAAGGAAGAGCTTCAGAAAAAGCTGGATCCTTCTGTCTTTAAGATAGGTTGTGCTCAGGCTGCGAAGAACAAATGGGTGGATATGGGGAAACAGCTGATGTCTAGAAAGGTCCAACATGTGGATGATAAGGTCAAAGATCTTCTTCTTCAGATACAACAGGGGCTGAACATTGGTTCAGACGAGATCAAAGCACTCAAAGTGAGAAAGCTCATTGTTCCACAGACGTGGAAGGGTTACTCATTGAAAAGAGGTCCTAATTATGCGCCCAAAAGAAAGAAGGTTGTCACTGATCTGACTCGTGATAATTTTCAGAGTGGTGAGTGGAAGGAACTTGAGTTCAAGGAGTACAATTATAGTGCTAAAGGTCAACCTCTTGAGGGTGGCAGTCTTCATCCATTGCTGAAGGTACGTGCTCAGCTGAAACAGATTTTCCTCTGCATGGGATTTGAGGAGATGCCAACAAATAATTTTGTTGAGAGCAGCTTCTGGAACTTTGATGCCTTGTTCCAGCCCCAACAACACCCAGCCCGTGATTCACATGATACATTCTTTTTGGAAACTCCTTCAACAACAAAGATTTTGCCAGAAGATTATGTTCAGAGAGTGAGGCAAGTTCATGAATCTGGTGGTTATGGGTCTAGAGGGTATGCATATGACTGGAAGAGAGAGGAAGCAAATAAAAACCTTCTGCGAACCCATACAACTGCTGTTTCCTCCAGGATGCTTTACCAATTAGCACAGAAACCATTTGCCCCCAAAAAATATTTCTCTATAGATCGTGTATTCAGAAATGAAGCAGTTGATCGTACACATCTTGCTGAGTTCCACCAAATAGAAGGCCTTGTATGCGATCTAGGACTCACTCTCTGTGACTTAATAGGAGTCCTACATGATTTCTTCTCACGCTTAGGCATGACCAAGCTGAAGTTCAAACCAGCTTACAATCCATACACCGAACCTAGCATGGAGATTTTTAGTTATCATGAAGGCTTTAAAAAATGGGTAGAGGTAGGAAATTCTGGCATGTTCAGACCCGAAATGTTGCAGCCGATGGGACTTCCTGAAGATGTCCAAGTTATTGCATGGGGCCTTTCCCTTGAAAGGCCAACGATGATACTATACGGGATAGATAACATTAGAGATCTCTTTGGACACAAGGTGGATCTTGGGCTTATAAAGAAGAATCCAATATGTCGACTTGGAATTGACTAA
>Glyma12g04730.2 sequence type=predicted peptide gene model=Glyma12g04730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRDAEDEEKTNGVVELLTKLLERLAKKDLEANLTAEAIMLEPPLSLNLLFLNAVSSTVLCGEAMAEEAILGYLEKNDEIKDSGEFAAECGIDHNEIVNVVKSLHGFRYVDAQDIKRETWVLTDEGKTYATVGSPEVQLFLAVPQEGISKEELQKKLDPSVFKIGCAQAAKNKWVDMGKQLMSRKVQHVDDKVKDLLLQIQQGLNIGSDEIKALKVRKLIVPQTWKGYSLKRGPNYAPKRKKVVTDLTRDNFQSGEWKELEFKEYNYSAKGQPLEGGSLHPLLKVRAQLKQIFLCMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLETPSTTKILPEDYVQRVRQVHESGGYGSRGYAYDWKREEANKNLLRTHTTAVSSRMLYQLAQKPFAPKKYFSIDRVFRNEAVDRTHLAEFHQIEGLVCDLGLTLCDLIGVLHDFFSRLGMTKLKFKPAYNPYTEPSMEIFSYHEGFKKWVEVGNSGMFRPEMLQPMGLPEDVQVIAWGLSLERPTMILYGIDNIRDLFGHKVDLGLIKKNPICRLGID*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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