Glyma12g04701 - SoyBase

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Report for Sequence Feature Glyma12g04701

Feature Type:	gene_model
Chromosome:	Gm12
Start:	3117039
stop:	3118185
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g04701

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G39260	AT	Annotation by Michelle Graham. TAIR10: cold, circadian rhythm, and RNA binding 1 \| chr4:18274166-18274958 REVERSE LENGTH=92	SoyBase	E_val: 1.00E-22	ISS
GO:0000380	GO-bp	Annotation by Michelle Graham. GO Biological Process: alternative mRNA splicing, via spliceosome	SoyBase	N/A	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0010043	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to zinc ion	SoyBase	N/A	ISS
GO:0045087	GO-bp	Annotation by Michelle Graham. GO Biological Process: innate immune response	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG0107	KOG	Alternative splicing factor SRp20/9G8 (RRM superfamily)	JGI		ISS
PTHR24012	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24012:SF31	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_Q9SWA8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Glycine-rich RNA-binding protein n=1 Tax=Glycine max RepID=Q9SWA8_SOYBN	SoyBase	E_val: 1.00E-67	ISS
UniRef100_Q9SWA8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycine-rich RNA-binding protein n=1 Tax=Glycine max RepID=Q9SWA8_SOYBN	SoyBase	E_val: 1.00E-67	ISS

Expression Patterns of Glyma12g04701

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g04701 not represented in the dataset	Glyma12g04701 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g04701

Paralog	Evidence	Comments
Glyma11g12471	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g04701 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g043000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g04701

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g04701

Limit To All Plant Sequences

>Glyma12g04701.2   sequence type=transcript   gene model=Glyma12g04701   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCGCGCCGTAACCCTGGTTAAAAGTTCACCAGCTATAAAACAATCGCTTGGGGTATGTATATTCTTCGTGCCAGTCTTACCCCTCTTAGTCCCAATTTTCTAGGGTTTTATTCATTTTCCGATGGCTTCTGCAGATGTTGAGTACCGTTGCTTTGTCGGTGGGCTCGCTTGGGCCACTGACGACCATGCCCTCGAGAGAGCCTTCTCTCAGTACGGCGAAATCGTTGAAACGAAGATTATCAACGATCGTGAGACTGGCAGATCCAGGGGTTTTGGATTTGTGACCTTCGCCTCGGAGCAGTCCATGAAAGATGCGATCGGAGCGATGAATGGACAGAACTTGGACGGCCGTAATATCACTGTCAATGAAGCTCAGTCCCGCGGTGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGATACAATCGTGGTGGCGGTGGATATGGTGGTCGTAGTGGCGGTGGCGGTGGCGGTGGTGGATACCGTAGCCGTGACGGTGGTTATGGCGGTGGCTATGGTGGTGGTGGTGGTGGTGGTTATGGCGGTGGCAGAGACCGTGGTTACTCTCGTGGTGGTGATGGTGGTGATGGAGGCTGGAGAAACTAAGGCTTGATGTCGTCAATTAGGGTTTATGATTATGCCCCGTATTTTTAGTTGTTGTGGTTTGAGTTCGAGTTTCTTTATGGTTTCGTGTTACCGTGGTTCTTGTTTTTGACCAATATATCTGGTTGTTTATAGTTGATTTAGTGAAATGATAATCAGTAATTGGAGTATCGAGTTTCTACAGGTTTTTAATTGTACGCTGGATGTGGAAAATTATTTTAATTCACTAATGATGAGTAATTTTATTCTGGTCAACACAACCAAAATAAA

Coding sequences of Glyma12g04701

Limit To All Plant Sequences

>Glyma12g04701.1   sequence type=CDS   gene model=Glyma12g04701   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTCTTTTATTACTCACGCCAATAGGTACGTTCATCTTCTTCCTTTCACCAAAGGCGAAGATCGATCGGCTTCTATTCGGTTCTGGTTTTGTTTTTTCGTGCTGTTTTGCTTTAGATCTGATAATTGTTTTACTGTCTTATGTTCAGATTATCAACGATCGTGAGACTGGCAGATCCAGGGGTTTTGGATTTGTGACCTTCGCCTCGGAGCAGTCCATGAAAGATGCGATCGGAGCGATGAATGGACAGAACTTGGACGGCCGTAATATCACTGTCAATGAAGCTCAGTCCCGCGGTGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGATACAATCGTGGTGGCGGTGGATATGGTGGTCGTAGTGGCGGTGGCGGTGGCGGTGGTGGATACCGTAGCCGTGACGGTGGTTATGGCGGTGGCTATGGTGGTGGTGGTGGTGGTGGTTATGGCGGTGGCAGAGACCGTGGTTACTCTCGTGGTGGTGATGGTGGTGATGGAGGCTGGAGAAACTAA

>Glyma12g04701.2   sequence type=CDS   gene model=Glyma12g04701   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTGCAGATGTTGAGTACCGTTGCTTTGTCGGTGGGCTCGCTTGGGCCACTGACGACCATGCCCTCGAGAGAGCCTTCTCTCAGTACGGCGAAATCGTTGAAACGAAGATTATCAACGATCGTGAGACTGGCAGATCCAGGGGTTTTGGATTTGTGACCTTCGCCTCGGAGCAGTCCATGAAAGATGCGATCGGAGCGATGAATGGACAGAACTTGGACGGCCGTAATATCACTGTCAATGAAGCTCAGTCCCGCGGTGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGATACAATCGTGGTGGCGGTGGATATGGTGGTCGTAGTGGCGGTGGCGGTGGCGGTGGTGGATACCGTAGCCGTGACGGTGGTTATGGCGGTGGCTATGGTGGTGGTGGTGGTGGTGGTTATGGCGGTGGCAGAGACCGTGGTTACTCTCGTGGTGGTGATGGTGGTGATGGAGGCTGGAGAAACTAA

Predicted protein sequences of Glyma12g04701

Limit To All Plant Sequences

>Glyma12g04701.1   sequence type=predicted peptide   gene model=Glyma12g04701   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MILLLLTPIGTFIFFLSPKAKIDRLLFGSGFVFSCCFALDLIIVLLSYVQIINDRETGRSRGFGFVTFASEQSMKDAIGAMNGQNLDGRNITVNEAQSRGGGGGGGGGGGGYNRGGGGYGGRSGGGGGGGGYRSRDGGYGGGYGGGGGGGYGGGRDRGYSRGGDGGDGGWRN*

>Glyma12g04701.2   sequence type=predicted peptide   gene model=Glyma12g04701   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASADVEYRCFVGGLAWATDDHALERAFSQYGEIVETKIINDRETGRSRGFGFVTFASEQSMKDAIGAMNGQNLDGRNITVNEAQSRGGGGGGGGGGGGYNRGGGGYGGRSGGGGGGGGYRSRDGGYGGGYGGGGGGGYGGGRDRGYSRGGDGGDGGWRN*

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