Glyma12g04680 - SoyBase

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Report for Sequence Feature Glyma12g04680

Feature Type:	gene_model
Chromosome:	Gm12
Start:	3109147
stop:	3111148
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g04680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G39250	AT	Annotation by Michelle Graham. TAIR10: RAD-like 1 \| chr4:18271457-18271857 REVERSE LENGTH=100	SoyBase	E_val: 8.00E-36	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR25040	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR25040:SF162	Panther		JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_G7J732	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DnaJ homolog subfamily C member n=1 Tax=Medicago truncatula RepID=G7J732_MEDTR	SoyBase	E_val: 7.00E-45	ISS
UniRef100_UPI000233D5FC	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D5FC related cluster n=1 Tax=unknown RepID=UPI000233D5FC	SoyBase	E_val: 7.00E-66	ISS

Expression Patterns of Glyma12g04680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g04680

Paralog	Evidence	Comments
Glyma11g12460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g04680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g042900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g04680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g04680

Limit To All Plant Sequences

>Glyma12g04680.2   sequence type=CDS   gene model=Glyma12g04680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCAAGCTCTCTCAGCAAACAAAAGGCTTCTGACTCCTCTTGGACACCAAAACAGAACAAGCTGTTTGAAAAAGCACTTGCAAAATATGACAAGGATACCCCTGACCGATGGCAGAATGTAGCCAAAGCAGTAGGTGGAAAATCTGCAGATGAAGTTAAGAGACACTATGAAATCCTCTTGGAGGATCTGAGACACATTGAGTCTGGTCATGTTCCTCTTCCCAAGTACAAGTCCACAGGAAGCAGCACCAATGTTGAGGAAGAAGAGAGGCTTCTGAAGTATCTTAAACTGAATTGA

Predicted protein sequences of Glyma12g04680

Limit To All Plant Sequences

>Glyma12g04680.2   sequence type=predicted peptide   gene model=Glyma12g04680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSSLSKQKASDSSWTPKQNKLFEKALAKYDKDTPDRWQNVAKAVGGKSADEVKRHYEILLEDLRHIESGHVPLPKYKSTGSSTNVEEEERLLKYLKLN*

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