SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G50930 | AT | Annotation by Michelle Graham. TAIR10: cytochrome BC1 synthesis | chr3:18929817-18931547 FORWARD LENGTH=576 | SoyBase | E_val: 1.00E-158 | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to mechanical stimulus | SoyBase | N/A | ISS |
| GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
| GO:0009697 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0052542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response by callose deposition | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| KOG0743 | KOG | AAA+-type ATPase | JGI | ISS | |
| PTHR23070 | Panther | BCS1 AAA-TYPE ATPASE | JGI | ISS | |
| PTHR23070:SF1 | Panther | AAA-TYPE ATPASE-RELATED | JGI | ISS | |
| PF00004 | PFAM | ATPase family associated with various cellular activities (AAA) | JGI | ISS | |
| UniRef100_B9RH77 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RH77_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LQ12 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LQ12_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g04490 not represented in the dataset |
Glyma12g04490 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g041100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g04490.1 sequence type=CDS gene model=Glyma12g04490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACTCCCAAACTCCAAACCGCGGCCTCCGTGGTGGCCACCGCGATGCTCCTCCGTTCCCTCGCCCGCGACTACGTCCCGGCGGAGCTCCACCACTACCTCCGCTGCAAACTGTCGAAACTCCTCTCCTCATTCTCCTCCGAACTGACTCTGGTCATCGATGAGTTTCACGGGCTGACGCCAAATCCCCTCTTCAGCGCCGCGCAGCTCTACCTCAAACCCCACGCCGCCCCCGATACAAAACGCTTCCGCGCCACCCTGCCCCCGAAATCGCGCCACGTTTCCCTCCTCGTGGAGCGCAACGGAGAAACCACCGACACCTTCAACTCCGTCCAGTTCCGGTGGAAACTGGTCTCCGAACGCGTCCCCGCGAGGTTCATCCATCAGGACTCCTTCCACTCCTTTTCGAAATCCGAGGTTCGGTTCTTCGAGCTGAGATTCCACAAGAAGCATAGGGACATGGTCCTCTCGGAGTACCTCCCGCGCGTGATGGAGGAAGCCGAGGTGGCGCGTGAGCGGAGGAAGACGCTGAAGCTCTTCACGCCGGCGGACATGAGGATGGTGGGAAGGAGAGGGTGCGAGATGTGGCAGGGCGTGAATCTGGACCATCCCGCCAAGTTCGAGACGCTGGCGATGGATTTGGAGATGAAGGAGATGATAATAAAGGATTTGGATACGTTTCTTGAGAGGAAGTTTTTGTATAAGAATGTTGGAAAGGCTTGGAAGAGAGGATACTTGCTATCTGGTCCTCCAGGCACTGGGAAATCGAGCTTGATCGCTGCCATGGCCAATTATCTGAATTTTGATGTCTATGACTTGGAACTTACTGATGTTAGGAGAAACACTGACCTCAGGAAGCTGTTGATTGGCACCGGGAATCGCTCTATTCTTGTTGTTGAGGATATTGATTGTTCCCTTACATTGCAGGATAGGCTTGCAAAACCCAAATCATCGCAACCAGTTGCTATCACACCATGGCCTTTCCACCCACATGACAATCCAAAACCCCAGGTGACGTTATCGGGGTTCCTGAATTTCATAGATGGGTTGTGGTCTAGTTGTGGGGATGAGAGGATCATAGTGTTCACGACCAATCACAAGAACAAATTGGACCCTGCTCTGTTGCGCCCTGGCCGTATGGATGTGCATATCGACATGACTTACTGCACCCCATGTGGGTTCAAAATGCTGGCTTTTAATTACCTTGGGATCACAGAGCACCCACTTTTTGTTGAAGTTGAGACATTGCTGAAGACGACCAATGTGACTCCTGCGGAGGTGGGGGAGCAGTTTTTGAAGAATGAAGACCCGGAAATTGCATTAGAAAGCTTGATGGAGCTCCTTATAGAGAAGGGACGAAACCATGAAAAGAACAAAGCAGCTCTCACCATTGAATGCTTTGAGTCCGCAGAGAGTTTTGAAAATGAAGGATGA
>Glyma12g04490.1 sequence type=predicted peptide gene model=Glyma12g04490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTPKLQTAASVVATAMLLRSLARDYVPAELHHYLRCKLSKLLSSFSSELTLVIDEFHGLTPNPLFSAAQLYLKPHAAPDTKRFRATLPPKSRHVSLLVERNGETTDTFNSVQFRWKLVSERVPARFIHQDSFHSFSKSEVRFFELRFHKKHRDMVLSEYLPRVMEEAEVARERRKTLKLFTPADMRMVGRRGCEMWQGVNLDHPAKFETLAMDLEMKEMIIKDLDTFLERKFLYKNVGKAWKRGYLLSGPPGTGKSSLIAAMANYLNFDVYDLELTDVRRNTDLRKLLIGTGNRSILVVEDIDCSLTLQDRLAKPKSSQPVAITPWPFHPHDNPKPQVTLSGFLNFIDGLWSSCGDERIIVFTTNHKNKLDPALLRPGRMDVHIDMTYCTPCGFKMLAFNYLGITEHPLFVEVETLLKTTNVTPAEVGEQFLKNEDPEIALESLMELLIEKGRNHEKNKAALTIECFESAESFENEG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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