Glyma12g04480 - SoyBase

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Report for Sequence Feature Glyma12g04480

Feature Type:	gene_model
Chromosome:	Gm12
Start:	2981851
stop:	2987782
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g04480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G34570	AT	Annotation by Michelle Graham. TAIR10: thymidylate synthase 2 \| chr4:16511129-16514110 REVERSE LENGTH=565	SoyBase	E_val: 0	ISS
GO:0006231	GO-bp	Annotation by Michelle Graham. GO Biological Process: dTMP biosynthetic process	SoyBase	N/A	ISS
GO:0006545	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycine biosynthetic process	SoyBase	N/A	ISS
GO:0006730	GO-bp	Annotation by Michelle Graham. GO Biological Process: one-carbon metabolic process	SoyBase	N/A	ISS
GO:0009165	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0009257	GO-bp	Annotation by Michelle Graham. GO Biological Process: 10-formyltetrahydrofolate biosynthetic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004146	GO-mf	Annotation by Michelle Graham. GO Molecular Function: dihydrofolate reductase activity	SoyBase	N/A	ISS
GO:0004799	GO-mf	Annotation by Michelle Graham. GO Molecular Function: thymidylate synthase activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG0673	KOG	Thymidylate synthase	JGI		ISS
PTHR11549	Panther	DIHYDROFOLATE REDUCTASE	JGI		ISS
PTHR11549:SF2	Panther	THYMIDYLATE SYNTHASE	JGI		ISS
PF00186	PFAM	Dihydrofolate reductase	JGI		ISS
PF00303	PFAM	Thymidylate synthase	JGI		ISS
UniRef100_I1LQ11	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Bifunctional dihydrofolate reductase-thymidylate synthase n=1 Tax=Glycine max RepID=I1LQ11_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1LQ11	UniRef	Annotation by Michelle Graham. Best UniRef hit: Bifunctional dihydrofolate reductase-thymidylate synthase n=1 Tax=Glycine max RepID=I1LQ11_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g04480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g04480 not represented in the dataset	Glyma12g04480 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g04480

Paralog	Evidence	Comments
Glyma11g12280	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g04480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g041000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g04480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g04480

Limit To All Plant Sequences

>Glyma12g04480.2   sequence type=transcript   gene model=Glyma12g04480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTAAGGATCGAAAGCTCTGCATTCGGGAGCGTTTTCTCGTTCTCTTGCACCCTCACTTTCAGTTTCAGCTGCTTCTTTTCTTTCATCATTTTTTTCTGCTTCATTGTTCAAGGGCTGAAAATAGTTCGCGCAAGATTTTTAGGCTTTTGAGTCCTATTATGGCAACTGATGCTCTTGTGATTTCCAATGGCAATGGCAATGGCAATGCCAAGTCAGAGCTGCATCCGCAGAGGACTTACCAAGTAGTAGTGGTTGCAACCAGAGATATGGGCATTTCTAAGGATGCAAAACTGCCCTGGACATTACCTACTGAACTCAAATTTTTTGAGGAGATCACTACAACAACATCTGATCCGGGGAAGAAGAATGCCGTTGTGATGGGTAGGAAAACATGGGAGAGCATCCCTCCTGAGAACAGGCCACTTCCTGGTCGCCTTAATGTTGTTCTGACTCGCTCGGGTAGCTTTGATATTGCAACAGCAGAGAATGTTCTTATATGTGGAAGTATGGCTTCTGCTATGGAGCTGTTGGCTTCTTCTCCTTACTGCCTATCAATTGAGAAAGTATTTCTCACAGGAGGTGGAGAGATATTTAGAGAGGCTCTTAATGCACCTGGATGTGAAGCTGCCCATATTACAGAAATTGAGGCAAGCATTGAGTGTGACACTTTTATGCCTCGAGTTGATACCAATGTATTTCAGACATGGTATTCATCTTTCCCTTTGGTGGAAGACAACCTCCGCTATTCTTTCACCACTTATGCGCGTGTAAGGAGTTCTCCACCAGAGTTCCTGGATCAGAATGCTGATCCATTTTTTTATAATAATTCAGACTCTTTCAAATTTGAGGTCAAGAAATTTTCTTTTCTTCCCAAAATGGTTTATGAGAGACATGAGGAGTTTAAGTATCTTAGGTTGGTTCAAGAAATCATTTCTGAAGGCACAACTAAGGATGATAGGACAGGGACTGGTACCTTGTCGAAATTTGGCTGCCAGATGAGGTTTAATCTGCGCAGAAACTTTCCTCTTCTAACAACAAAGAAAGTATTTTGGCGAGGGGTAGTTGAAGAGCTTCTTTGGTTTATCAGTGGCTCAACAAGTGCCAAGGCGCTGCAGGAAAAAGGCATTCATATATGGGATGGCAATGCATCCAGGGACATTGGTTTGACAGAAAGGGAGAAGGGTGACTTAGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGAGCCAAGTATACTGACATGCATGCTGACTACTCTGGCCAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCCAATGATCGAAGGATCATTCTCTCAGCGTGGAATCCATCTGATCTTAAATTGATGGCACTTCCACCCTGCCACATGTTTGCACAGTTCTATGTAGCTAATGGGGAGCTATCATGTCAAATGTATCAGCGATCTGCCGACATGGGCCTGGGTGTCCCATTTAATATTGCATCTTATGCACTCCTGACATGCATGATCGCTCATGTTTGTGACCTTGTTCCAGGTGATTTTATCCATGTTATTGGGGATGCACATGTTTACCGCAATCATGTGAGACCCTTGCAGGAACAGCTCCAGAACCAACCAAAACCTTTTCCAATTTTGAAGATAAACCCAAAGAAGAAAGATATAGATTCTTTTGTGGCAGCTGATTTCAAGCTCATAGGATATGATCCTCACCAGAAGATAGAAATGAAGATGGCTGTTTAGGGATCTTGTGAGATTCTCAATCCCTGCTTCAGGCCGTTATGCTTTCTGATGTGAGGCAAGTAATATATATTTATTTTTCCATGATTTTATTTATGTAAAGGAGATTTGTATTATCTGGTTGAGACTTGTCACCTGGGCAGTATGGCAAACCCAAAAATAGGATTTTAGGATTCATTTTGAACTAGTTTTGACTTGATTTTCTGAATTTAAGGGCACACACTTAAAATACGTTATTAATTTCTCTGCTTTTTAGCAAAATTTATG

Coding sequences of Glyma12g04480

Limit To All Plant Sequences

>Glyma12g04480.1   sequence type=CDS   gene model=Glyma12g04480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACTGATGCTCTTGTGATTTCCAATGGCAATGGCAATGGCAATGCCAAGTCAGAGCTGCATCCGCAGAGGACTTACCAAGTAGTAGTGGTTGCAACCAGAGATATGGGCATTTCTAAGGATGCAAAACTGCCCTGGACATTACCTACTGAACTCAAATTTTTTGAGGAGATCACTACAACAACATCTGATCCGGGGAAGAAGAATGCCGTTGTGATGGGTAGGAAAACATGGGAGAGCATCCCTCCTGAGAACAGGCCACTTCCTGGTCGCCTTAATGTTGTTCTGACTCGCTCGGGTAGCTTTGATATTGCAACAGCAGAGAATGTTCTTATATGTGGAAGTATGGCTTCTGCTATGGAGCTGTTGGCTTCTTCTCCTTACTGCCTATCAATTGAGAAAGTATTTCTCACAGGAGGTGGAGAGATATTTAGAGAGGCTCTTAATGCACCTGGATGTGAAGCTGCCCATATTACAGAAATTGAGGCAAGCATTGAGTGTGACACTTTTATGCCTCGAGTTGATACCAATGTATTTCAGACATGGTATTCATCTTTCCCTTTGGTGGAAGACAACCTCCGCTATTCTTTCACCACTTATGCGCGTGTAAGGAGTTCTCCACCAGAGTTCCTGGATCAGAATGCTGATCCATTTTTTTATAATAATTCAGACTCTTTCAAATTTGAGGTCAAGAAATTTTCTTTTCTTCCCAAAATGGTTTATGAGAGACATGAGGAGTTTAAGTATCTTAGGTTGGTTCAAGAAATCATTTCTGAAGGCACAACTAAGGATGATAGGACAGGGACTGGTACCTTGTCGAAATTTGGCTGCCAGATGAGGTTTAATCTGCGCAGAAACTTTCCTCTTCTAACAACAAAGAAAGTATTTTGGCGAGGGGTAGTTGAAGAGCTTCTTTGGTTTATCAGTGGCTCAACAAGTGCCAAGGCGCTGCAGGAAAAAGGCATTCATATATGGGATGGCAATGCATCCAGGGAGTACCTTGATAGCATTGGTTTGACAGAAAGGGAGAAGGGTGACTTAGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGAGCCAAGTATACTGACATGCATGCTGACTACTCTGGCCAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCCAATGATCGAAGGATCATTCTCTCAGCGTGGAATCCATCTGATCTTAAATTGATGGCACTTCCACCCTGCCACATGTTTGCACAGTTCTATGTAGCTAATGGGGAGCTATCATGTCAAATGTATCAGCGATCTGCCGACATGGGCCTGGGTGTCCCATTTAATATTGCATCTTATGCACTCCTGACATGCATGATCGCTCATGTTTGTGACCTTGTTCCAGGTGATTTTATCCATGTTATTGGGGATGCACATGTTTACCGCAATCATGTGAGACCCTTGCAGGAACAGCTCCAGAACCAACCAAAACCTTTTCCAATTTTGAAGATAAACCCAAAGAAGAAAGATATAGATTCTTTTGTGGCAGCTGATTTCAAGCTCATAGGATATGATCCTCACCAGAAGATAGAAATGAAGATGGCTGTTTAG

>Glyma12g04480.2   sequence type=CDS   gene model=Glyma12g04480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTAAGGATCGAAAGCTCTGCATTCGGGAGCGTTTTCTCGTTCTCTTGCACCCTCACTTTCAGTTTCAGCTGCTTCTTTTCTTTCATCATTTTTTTCTGCTTCATTGTTCAAGGGCTGAAAATAGTTCGCGCAAGATTTTTAGGCTTTTGAGTCCTATTATGGCAACTGATGCTCTTGTGATTTCCAATGGCAATGGCAATGGCAATGCCAAGTCAGAGCTGCATCCGCAGAGGACTTACCAAGTAGTAGTGGTTGCAACCAGAGATATGGGCATTTCTAAGGATGCAAAACTGCCCTGGACATTACCTACTGAACTCAAATTTTTTGAGGAGATCACTACAACAACATCTGATCCGGGGAAGAAGAATGCCGTTGTGATGGGTAGGAAAACATGGGAGAGCATCCCTCCTGAGAACAGGCCACTTCCTGGTCGCCTTAATGTTGTTCTGACTCGCTCGGGTAGCTTTGATATTGCAACAGCAGAGAATGTTCTTATATGTGGAAGTATGGCTTCTGCTATGGAGCTGTTGGCTTCTTCTCCTTACTGCCTATCAATTGAGAAAGTATTTCTCACAGGAGGTGGAGAGATATTTAGAGAGGCTCTTAATGCACCTGGATGTGAAGCTGCCCATATTACAGAAATTGAGGCAAGCATTGAGTGTGACACTTTTATGCCTCGAGTTGATACCAATGTATTTCAGACATGGTATTCATCTTTCCCTTTGGTGGAAGACAACCTCCGCTATTCTTTCACCACTTATGCGCGTGTAAGGAGTTCTCCACCAGAGTTCCTGGATCAGAATGCTGATCCATTTTTTTATAATAATTCAGACTCTTTCAAATTTGAGGTCAAGAAATTTTCTTTTCTTCCCAAAATGGTTTATGAGAGACATGAGGAGTTTAAGTATCTTAGGTTGGTTCAAGAAATCATTTCTGAAGGCACAACTAAGGATGATAGGACAGGGACTGGTACCTTGTCGAAATTTGGCTGCCAGATGAGGTTTAATCTGCGCAGAAACTTTCCTCTTCTAACAACAAAGAAAGTATTTTGGCGAGGGGTAGTTGAAGAGCTTCTTTGGTTTATCAGTGGCTCAACAAGTGCCAAGGCGCTGCAGGAAAAAGGCATTCATATATGGGATGGCAATGCATCCAGGGACATTGGTTTGACAGAAAGGGAGAAGGGTGACTTAGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGAGCCAAGTATACTGACATGCATGCTGACTACTCTGGCCAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCCAATGATCGAAGGATCATTCTCTCAGCGTGGAATCCATCTGATCTTAAATTGATGGCACTTCCACCCTGCCACATGTTTGCACAGTTCTATGTAGCTAATGGGGAGCTATCATGTCAAATGTATCAGCGATCTGCCGACATGGGCCTGGGTGTCCCATTTAATATTGCATCTTATGCACTCCTGACATGCATGATCGCTCATGTTTGTGACCTTGTTCCAGGTGATTTTATCCATGTTATTGGGGATGCACATGTTTACCGCAATCATGTGAGACCCTTGCAGGAACAGCTCCAGAACCAACCAAAACCTTTTCCAATTTTGAAGATAAACCCAAAGAAGAAAGATATAGATTCTTTTGTGGCAGCTGATTTCAAGCTCATAGGATATGATCCTCACCAGAAGATAGAAATGAAGATGGCTGTTTAG

Predicted protein sequences of Glyma12g04480

Limit To All Plant Sequences

>Glyma12g04480.1   sequence type=predicted peptide   gene model=Glyma12g04480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATDALVISNGNGNGNAKSELHPQRTYQVVVVATRDMGISKDAKLPWTLPTELKFFEEITTTTSDPGKKNAVVMGRKTWESIPPENRPLPGRLNVVLTRSGSFDIATAENVLICGSMASAMELLASSPYCLSIEKVFLTGGGEIFREALNAPGCEAAHITEIEASIECDTFMPRVDTNVFQTWYSSFPLVEDNLRYSFTTYARVRSSPPEFLDQNADPFFYNNSDSFKFEVKKFSFLPKMVYERHEEFKYLRLVQEIISEGTTKDDRTGTGTLSKFGCQMRFNLRRNFPLLTTKKVFWRGVVEELLWFISGSTSAKALQEKGIHIWDGNASREYLDSIGLTEREKGDLGPVYGFQWRHFGAKYTDMHADYSGQGFDQLLDVINKIKHNPNDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFIHVIGDAHVYRNHVRPLQEQLQNQPKPFPILKINPKKKDIDSFVAADFKLIGYDPHQKIEMKMAV*

>Glyma12g04480.2   sequence type=predicted peptide   gene model=Glyma12g04480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIKDRKLCIRERFLVLLHPHFQFQLLLFFHHFFLLHCSRAENSSRKIFRLLSPIMATDALVISNGNGNGNAKSELHPQRTYQVVVVATRDMGISKDAKLPWTLPTELKFFEEITTTTSDPGKKNAVVMGRKTWESIPPENRPLPGRLNVVLTRSGSFDIATAENVLICGSMASAMELLASSPYCLSIEKVFLTGGGEIFREALNAPGCEAAHITEIEASIECDTFMPRVDTNVFQTWYSSFPLVEDNLRYSFTTYARVRSSPPEFLDQNADPFFYNNSDSFKFEVKKFSFLPKMVYERHEEFKYLRLVQEIISEGTTKDDRTGTGTLSKFGCQMRFNLRRNFPLLTTKKVFWRGVVEELLWFISGSTSAKALQEKGIHIWDGNASRDIGLTEREKGDLGPVYGFQWRHFGAKYTDMHADYSGQGFDQLLDVINKIKHNPNDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFIHVIGDAHVYRNHVRPLQEQLQNQPKPFPILKINPKKKDIDSFVAADFKLIGYDPHQKIEMKMAV*

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