SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G16440 | AT | Annotation by Michelle Graham. TAIR10: Minichromosome maintenance (MCM2/3/5) family protein | chr2:7126536-7130665 REVERSE LENGTH=847 | SoyBase | E_val: 0 | ISS |
| GO:0000280 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear division | SoyBase | N/A | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0006260 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication | SoyBase | N/A | ISS |
| GO:0006261 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication | SoyBase | N/A | ISS |
| GO:0006268 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA unwinding involved in replication | SoyBase | N/A | ISS |
| GO:0006270 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication initiation | SoyBase | N/A | ISS |
| GO:0006275 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication | SoyBase | N/A | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0006342 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing | SoyBase | N/A | ISS |
| GO:0007000 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleolus organization | SoyBase | N/A | ISS |
| GO:0008283 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell proliferation | SoyBase | N/A | ISS |
| GO:0009165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0034968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone lysine methylation | SoyBase | N/A | ISS |
| GO:0051322 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anaphase | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0051726 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle | SoyBase | N/A | ISS |
| GO:0000790 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear chromatin | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008094 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA-dependent ATPase activity | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| KOG0478 | KOG | DNA replication licensing factor, MCM4 component | JGI | ISS | |
| PTHR11630 | Panther | DNA REPLICATION LICENSING FACTOR | JGI | ISS | |
| PTHR11630:SF45 | Panther | DNA REPLICATION LICENSING FACTOR MCM4 | JGI | ISS | |
| PF00493 | PFAM | MCM2/3/5 family | JGI | ISS | |
| UniRef100_B0LUQ7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Minichromosome maintenance 4 protein n=1 Tax=Pisum sativum RepID=B0LUQ7_PEA | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LPZ2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LPZ2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g04320 not represented in the dataset |
Glyma12g04320 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g12110 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g039200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g04320.1 sequence type=CDS gene model=Glyma12g04320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCCGATTCTTCTCCCCTGAATTTCAACAACGGACCTTCATCCCCCGACGACTCCCTTTCCAGCCCTATCGGCAACACCTTCTCCTCGCCGGCAAGTAGACGCCGGCGCCGCTCATCCACCCCCTCCGCATTCGCCACCCCGTCGGAGCGCCGCTCCCGATTCGCCTCCTCCGATGCCACCCCAACCGCGCCGCGCTCCCGCCAGAGAGGTGGCAGTGGAGGCGGCGGAGGGCACGTTCCCGCCACTCCGACCTCCACCACCGACGACGTGCCGGTCTCTTCGGATGGCGGCGACGGCTTCGACATGGACGATGCCAGGCCCACCTTCGTGTGGGGCACCAACATAAGCGTGGAAGACGTGAACGACGCGATTAAAAGGTTTGTGAGGAACTTCAGAGAAGCGTCTTCGTCGCAGGGTGGTGACGATGATGACGGGTTGCACTTGCACACCGAAGGGAAGTATGAGAAACTGATCAGACAGGTTATTGACGTTGAAGGAGATTCTCTTGATGTTGATGCGCGTGATGTGTTTGATCATGACCCTGATCTGTACACTAAGATGGTTAGGTACCCTCTTGAGGTGCTTGCCATCTTTGATTTGGTCTTGATGAACATGGTTAGCGAATTGAAGCCTATGTTCGAGAAGCACATTCAGACCCGTATTTTCAATCTCAGAACCTCAACCTCTATGAGAAATTTGAACCCATCTGATATTGAGAGGATGGTATCATTGAAGGGAATGGTTATAAGAAGCAGCTCAATCATTCCAGAGATTAGGGAAGCTATATTTAGGTGTCTTGTGTGTGGATTCTGCTCTGAGCCAGTTCCTGTGGAGAGAGGGCGAATAACTGAACCCACTATATGTTTGAGGGAAGAGTGTCAATCCAGAAACTCCATGGCACTTGTTCACAACCGATGCAGGTTTGCTGACAAGCAAATTGTGAGGGTCCAGGAGACACCTGACGAGATTCCTGAAGGAGGAACACCTCACACAGTTAGCTTGCTGATGCATGACAAGTTGGTGGATAATGCAAAGCCAGGTGACAGAGTTGAGGTGACTGGTATTTATAGGGCTATGAGTGTCAGGGTTGGACCAACACAGAGAACTGTTAAGTCATTGTTCAAGACATATATTGATTGTCTTCACATAAAGAAGACTGATAAGTCCAGGATGTTTGTAGAGGATGTTATGGATGTTGATGGTCAAGATAGAAATGCAGAAGTTCTCTTTGATGAAGAAAAGGTGGCTCAACTGAAGGAGCTCTCAAAACGGCCTGATATATATGAAATACTGACAAATTCATTGGCTCCAAACATCTGGGAGCTAGATGATGTGAAAAAAGGTCTTCTTTGTCAGCTTTTTGGTGGCAATGCTTTGAAGTTAGCTTCTGGTGCTAACTTTCGTGGCGATATAAATATTCTTCTCGTTGGTGATCCTGGGACAAGCAAGTCCCAGTTACTTCAATACATACACAAACTATCTCCACGTGGCATTTACACCAGTGGAAGGGGAAGTTCAGCCGTTGGATTGACTGCTTATGTGACCAAGGACCCCGAAACAGGAGAAACTGTTTTAGAGAGTGGTGCCCTTGTTTTGAGTGACCGAGGTATATGTTGTATTGATGAATTTGACAAAATGTCTGACAATGCAAGGAGCATGTTACATGAGGTGATGGAACAACAAACCGTTTCAATAGCAAAGGCAGGTATTATTGCTTCCCTCAATGCTAGGACTTCGGTGTTGGCTTGTGCAAATCCAAGTGGGTCAAGATATAATCCTCGCTTGTCTGTCATTGACAACATACACCTTCCTCCCACTCTTTTGTCCAGATTTGATTTAATCTACTTGATGCTTGACAAGGCTCATGAACAGACTGATAGGCGCCTTGCCAAACATATTGTGTCCCTACACTTTGAGAATCCCGAGAACGTGGAGCAGGATGTGTTGGACATTTCTACATTAACCGATTATGTTAGCTATGCCCGAAGGCACATACACCCACAGCTTTCTGATGAAGCTGCTGAAGAATTGACTAGAGGTTACGTAGAAATAAGAAAAAGAGGAAATTTTCCTGGGAGTAGCAAAAAGGTGATAACAGCAACACCGAGGCAGATTGAGAGTCTGATACGCCTAAGTGAAGCATTGGCTCGGATGCGCTTCTCAGAATGGGTCGAAAAACATGATGTAATGGAGGCTTTTCGGCTTTTGGAAGTTGCGATGCAGCAGTCTGCAACGGATCATTCTACTGGAACTATTGACATGGATCTTATTACTACTGGAGTTTCGGCAAGCGAAAGGATGAGACGAGAAAGTTTGCAACAAGCTACTCGTAACATAATCATGGAGAAAATGCAGATTGGGGGACAATCTATGCGGTTATTGGAGTTATTGGAAGAATTGAAGAAACAGGATACTGGTAGCGATGTTCATCTTAATGATCTAAGGAATGCAATTGCTACTCTCGCTGCAGAAGGATTTGTTACCATGCACGGTGACAGTGTAAAAAGATCTTGA
>Glyma12g04320.1 sequence type=predicted peptide gene model=Glyma12g04320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASDSSPLNFNNGPSSPDDSLSSPIGNTFSSPASRRRRRSSTPSAFATPSERRSRFASSDATPTAPRSRQRGGSGGGGGHVPATPTSTTDDVPVSSDGGDGFDMDDARPTFVWGTNISVEDVNDAIKRFVRNFREASSSQGGDDDDGLHLHTEGKYEKLIRQVIDVEGDSLDVDARDVFDHDPDLYTKMVRYPLEVLAIFDLVLMNMVSELKPMFEKHIQTRIFNLRTSTSMRNLNPSDIERMVSLKGMVIRSSSIIPEIREAIFRCLVCGFCSEPVPVERGRITEPTICLREECQSRNSMALVHNRCRFADKQIVRVQETPDEIPEGGTPHTVSLLMHDKLVDNAKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTDKSRMFVEDVMDVDGQDRNAEVLFDEEKVAQLKELSKRPDIYEILTNSLAPNIWELDDVKKGLLCQLFGGNALKLASGANFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLMLDKAHEQTDRRLAKHIVSLHFENPENVEQDVLDISTLTDYVSYARRHIHPQLSDEAAEELTRGYVEIRKRGNFPGSSKKVITATPRQIESLIRLSEALARMRFSEWVEKHDVMEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRESLQQATRNIIMEKMQIGGQSMRLLELLEELKKQDTGSDVHLNDLRNAIATLAAEGFVTMHGDSVKRS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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