SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G21370 | AT | Annotation by Michelle Graham. TAIR10: xylulose kinase-1 | chr2:9137582-9140050 REVERSE LENGTH=478 | SoyBase | E_val: 9.00E-129 | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0005998 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylulose catabolic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0004856 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: xylulokinase activity | SoyBase | N/A | ISS |
| GO:0016773 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, alcohol group as acceptor | SoyBase | N/A | ISS |
| PTHR10196 | Panther | XYLULOSE KINASE | JGI | ISS | |
| PTHR10196:SF1 | Panther | XYLULOSE KINASE | JGI | ISS | |
| UniRef100_B9RHB4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Xylulose kinase, putative n=1 Tax=Ricinus communis RepID=B9RHB4_RICCO | SoyBase | E_val: 3.00E-137 | ISS |
| UniRef100_UPI000233D5F3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D5F3 related cluster n=1 Tax=unknown RepID=UPI000233D5F3 | SoyBase | E_val: 0 | ISS |
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Glyma12g04252 not represented in the dataset |
Glyma12g04252 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g12040 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
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| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g04252.1 sequence type=CDS gene model=Glyma12g04252 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCCTCGGAAACGGGAATAACAAGAAAGTAGAAATGAATGTTAGAGGAGCAGGTGAAAGGTTTGCCGGGTTTGCCATCATTGACAAAGATGGGACAATTCAAGCTGATGCTAAGAGAGAGTACCCGCTAAAGAGTGGAGAGTCACATGATTGGGTACGCTCATGGAAGGAGACACTGTTTTCTCTGCTTCAAGATGTCCCACTTCACCTTCGCAAACACGTTGTCTTCATTTCTACTGATGGGACTTCTGCAACTGCTCTCATAGTCGATAGTGACTCAGGAGAACCGTTGTGGAGACCTTTACTTCACAATGAGAGTTGCCCTGATGCATTACCAATGGTGAAATCTATTGCTCCTCCAAACCATATACGGTTTGCGCCGGATCCGGATTGGCTTTTGTGGTTTCTTCATGGAAGGCTTGGGGTTGGCTATGATCCTGAGGTGGACTCATATCCTTCATGGCTAGTCTCTCAACCATATTATCATCTTTTACCTTCGGTTGTTGCTCCTGGAACTCCAATTAGCTCTGGAACCACTGACAGTATAGCTGCATTTCTTGCAGCTCGTGCTACACAACCTGGGAAAGCTGTCACTTCATTGGGTTCAACACCAGCTATTAAACTACTCGGCAACACAAGAATTGAGGATTCTCGGTTTGGGGTGTACAGCCATCGCCTTGATGATAAATGGCTTGTTGGTGATAAGTTGTTCACTGATGAACAATTAGAGAAACTGAGTGAACAAATTAATCCCTCACAACCTTCACTTCTGGATTACTATCCTCTGGCAATAGCAGGTGAAGGATTCCCAGTAGCAGATCCAGATTTGGCTCCAAGGCTACTTCCACGTCCAGAAAATGATGTTGAGTGCTTGCATGGGATTTTAGAATCCATTGCACGTATAGAGGCAAAGGCATATGGGTTGTTAAAGGAGCTAGGAGCAACCCAGTCGTGCAAATCAAACACTGCCTATGGAGCTGCATTATTGGCAATAAAGGGTGATCAACAAAATATTTTGTGA
>Glyma12g04252.1 sequence type=predicted peptide gene model=Glyma12g04252 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLGNGNNKKVEMNVRGAGERFAGFAIIDKDGTIQADAKREYPLKSGESHDWVRSWKETLFSLLQDVPLHLRKHVVFISTDGTSATALIVDSDSGEPLWRPLLHNESCPDALPMVKSIAPPNHIRFAPDPDWLLWFLHGRLGVGYDPEVDSYPSWLVSQPYYHLLPSVVAPGTPISSGTTDSIAAFLAARATQPGKAVTSLGSTPAIKLLGNTRIEDSRFGVYSHRLDDKWLVGDKLFTDEQLEKLSEQINPSQPSLLDYYPLAIAGEGFPVADPDLAPRLLPRPENDVECLHGILESIARIEAKAYGLLKELGATQSCKSNTAYGAALLAIKGDQQNIL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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