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Report for Sequence Feature Glyma12g04150

Feature Type:gene_model
Chromosome:Gm12
Start:2712992
stop:2715790
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g04150
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G38970AT Annotation by Michelle Graham. TAIR10: fructose-bisphosphate aldolase 2 | chr4:18163714-18165659 REVERSE LENGTH=398 SoyBaseE_val: 0ISS
GO:0000096GO-bp Annotation by Michelle Graham. GO Biological Process: sulfur amino acid metabolic process SoyBaseN/AISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006098GO-bp Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt SoyBaseN/AISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0006546GO-bp Annotation by Michelle Graham. GO Biological Process: glycine catabolic process SoyBaseN/AISS
GO:0006636GO-bp Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process SoyBaseN/AISS
GO:0006733GO-bp Annotation by Michelle Graham. GO Biological Process: oxidoreduction coenzyme metabolic process SoyBaseN/AISS
GO:0006766GO-bp Annotation by Michelle Graham. GO Biological Process: vitamin metabolic process SoyBaseN/AISS
GO:0008652GO-bp Annotation by Michelle Graham. GO Biological Process: cellular amino acid biosynthetic process SoyBaseN/AISS
GO:0009072GO-bp Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family metabolic process SoyBaseN/AISS
GO:0009073GO-bp Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process SoyBaseN/AISS
GO:0009106GO-bp Annotation by Michelle Graham. GO Biological Process: lipoate metabolic process SoyBaseN/AISS
GO:0009108GO-bp Annotation by Michelle Graham. GO Biological Process: coenzyme biosynthetic process SoyBaseN/AISS
GO:0009117GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide metabolic process SoyBaseN/AISS
GO:0009657GO-bp Annotation by Michelle Graham. GO Biological Process: plastid organization SoyBaseN/AISS
GO:0009695GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009965GO-bp Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis SoyBaseN/AISS
GO:0010207GO-bp Annotation by Michelle Graham. GO Biological Process: photosystem II assembly SoyBaseN/AISS
GO:0010304GO-bp Annotation by Michelle Graham. GO Biological Process: PSII associated light-harvesting complex II catabolic process SoyBaseN/AISS
GO:0015995GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process SoyBaseN/AISS
GO:0019252GO-bp Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0019344GO-bp Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process SoyBaseN/AISS
GO:0019748GO-bp Annotation by Michelle Graham. GO Biological Process: secondary metabolic process SoyBaseN/AISS
GO:0019760GO-bp Annotation by Michelle Graham. GO Biological Process: glucosinolate metabolic process SoyBaseN/AISS
GO:0030154GO-bp Annotation by Michelle Graham. GO Biological Process: cell differentiation SoyBaseN/AISS
GO:0044272GO-bp Annotation by Michelle Graham. GO Biological Process: sulfur compound biosynthetic process SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009579GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0010287GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastoglobule SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004332GO-mf Annotation by Michelle Graham. GO Molecular Function: fructose-bisphosphate aldolase activity SoyBaseN/AISS
KOG1557 KOG Fructose-biphosphate aldolase JGI ISS
PTHR11627Panther FRUCTOSE-BISPHOSPHATE ALDOLASE JGI ISS
PF00274PFAM Fructose-bisphosphate aldolase class-I JGI ISS
UniRef100_I1LPX6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Fructose-bisphosphate aldolase n=1 Tax=Glycine max RepID=I1LPX6_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1LPX6UniRef Annotation by Michelle Graham. Best UniRef hit: Fructose-bisphosphate aldolase n=1 Tax=Glycine max RepID=I1LPX6_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma12g04150
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g04150 not represented in the dataset
Glyma12g04150 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g04150
ParalogEvidenceComments
Glyma11g11870 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g04150 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g037400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g04150
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g04150
>Glyma12g04150.1   sequence type=CDS   gene model=Glyma12g04150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCTGCATCAGCATCTCTGCTCAAGTCTTCACTTGTTCTTGACAAGTCTGAGTGGGTGAAGGGACAAACCCTTCGCCAACCTTCTGCATCAGTTGTGAGATGCAACCCCACCACCCCATCAGGCCTCACCATCAGAGCTGGTTCCTATGCTGATGAGCTCGTTAAGACCGCGAAAACAGTGGCTTCACCAGGGAGGGGTATTTTGGCCATGGATGAGTCCAATGCTACCTGTGGGAAGCGTTTGGCTTCAATTGGGCTAGAGAACACTGAAGCTAACCGCCAGGCATACCGTACCCTCCTCGTGACAGTTCCAGGCCTTGGTCAGTACATCTCTGGTGCCATTCTCTTTGAGGAAACACTCTACCAATCCACAACTGATGGCAGGAAGATTGTTGACGTGCTGCTTGAGCAAAACATTGTTCCTGGTATTAAAGTCGACAAGGGTTTGGTGCCCCTTGCAGGTTCCAACGACGAGTCATGGTGCCAAGGTTTGGATGGTCTAGCCTCTCGCTCAGCTGCATACTACGAGCAAGGTGCCCGTTTCGCCAAATGGCGTACTGTTGTGAGCATCCCCAACGGTCCCTCTGCTCTGGCAGTTAAGGAAGCAGCCTGGGGTCTGGCTCGCTATGCTGCAATTGCTCAGGACAATGGGTTGGTCCCAATTGTGGAGCCAGAGATCTTGCTTGATGGGGAGCATGGTATTGATAGAACTTTTGAAGTAGCCCAAAAGGTCTGGGCAGAGGTTTTCTTCTACCTTGCTGAGAACAATGTCCTTTTTGAGGGTATTCTCCTTAAGCCTAGCATGGTTACACCTGGAGCCGAGTCCAAGGACAAGGCCAGTCCTCAGACAGTTGCTGATTACACCCTCAAGCTCCTTCACAGGAGAATTCCCCCTGCTGTCCCTGGAATTATGTTTTTGTCTGGTGGACAGTCTGAGGTTGAAGCTACCCTCAATTTGAATGCCATGAACCAATCTCCAAACCCGTGGCACGTGTCATTCTCGTATGCCAGAGCCCTCCAAAACACTGCCTTGAAGACATGGGGAGGCCGCCCAGAGAACGTGAAGGCAGCACAAGATGCACTCGCATTCCGTGCCAAGTCCAACTCACTCGCTCAGCTTGGGAAGTACACTGGTGAGGGTGAATCCGAGGAAGCCAAGAAGGAGTTGTTCGTCAAAAGCTACTCCTACTAA
Predicted protein sequences of Glyma12g04150
>Glyma12g04150.1   sequence type=predicted peptide   gene model=Glyma12g04150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASASASLLKSSLVLDKSEWVKGQTLRQPSASVVRCNPTTPSGLTIRAGSYADELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTVPGLGQYISGAILFEETLYQSTTDGRKIVDVLLEQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRSAAYYEQGARFAKWRTVVSIPNGPSALAVKEAAWGLARYAAIAQDNGLVPIVEPEILLDGEHGIDRTFEVAQKVWAEVFFYLAENNVLFEGILLKPSMVTPGAESKDKASPQTVADYTLKLLHRRIPPAVPGIMFLSGGQSEVEATLNLNAMNQSPNPWHVSFSYARALQNTALKTWGGRPENVKAAQDALAFRAKSNSLAQLGKYTGEGESEEAKKELFVKSYSY*






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