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Report for Sequence Feature Glyma12g04141

Feature Type:gene_model
Chromosome:Gm12
Start:2707353
stop:2708289
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G52370AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:21260558-21261203 REVERSE LENGTH=142 SoyBaseE_val: 3.00E-24ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_UPI000233D5EFUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233D5EF related cluster n=1 Tax=unknown RepID=UPI000233D5EF SoyBaseE_val: 2.00E-63ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g04141 not represented in the dataset

Glyma12g04141 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma11g11860 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g037300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma12g04141.1   sequence type=CDS   gene model=Glyma12g04141   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAGTGCTTTGGGTAGCAGAGTTGAATCTGTTCGAAACTCTCCCTTGGTAAGATTTTCGATCAACTTTATCAGATCCTTTGGCTCTTCTTCTTCTTCATCTGCCGTTTCTTCTGCTCAGAACCCTAAGAAATCAAAGCGAAGAAAGAAGAACTTATTGGATGTGGCTGAGTTCTTATCTAACTGGGGAATCGGCTACCACATGGCCAAGACTCACTGGAACGAAGTTTCTGACGAAATCACTAAAATCAATCTTTACAAGGATGGAAGACATGGGGATTGCTTTTAA

>Glyma12g04141.1   sequence type=predicted peptide   gene model=Glyma12g04141   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASALGSRVESVRNSPLVRFSINFIRSFGSSSSSSAVSSAQNPKKSKRRKKNLLDVAEFLSNWGIGYHMAKTHWNEVSDEITKINLYKDGRHGDCF*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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