SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G21280 | AT | Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein | chr2:9110502-9112679 REVERSE LENGTH=347 | SoyBase | E_val: 0 | ISS |
| GO:0006098 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt | SoyBase | N/A | ISS |
| GO:0010020 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast fission | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0016117 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0044237 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular metabolic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0050662 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: coenzyme binding | SoyBase | N/A | ISS |
| KOG3019 | KOG | Predicted nucleoside-diphosphate sugar epimerase | JGI | ISS | |
| PTHR11092 | Panther | SUGAR NUCLEOTIDE EPIMERASE RELATED | JGI | ISS | |
| PF01370 | PFAM | NAD dependent epimerase/dehydratase family | JGI | ISS | |
| PF08338 | PFAM | Domain of unknown function (DUF1731) | JGI | ISS | |
| UniRef100_I1LPX1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LPX1_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q6EP22 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cell division inhibitor-like n=2 Tax=Oryza sativa Japonica Group RepID=Q6EP22_ORYSJ | SoyBase | E_val: 2.00E-163 | ISS |
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Glyma12g04100 not represented in the dataset |
Glyma12g04100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g036900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g04100.1 sequence type=CDS gene model=Glyma12g04100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAATGTGTGGAGCCACAGCACTGACATGGTCCCATACCATCTGTCCGTCGCTTCACCTTCCTCGATCCGTCTCTACCAGGGAGGCTAGGAGCTTCTGTGTTTGGTGTGTCTCTGATCAAGACCCCAAGGGAAATAAAATGATCATATCTGTAACTGGAGCAACAGGTTTTATTGGTAGAAGGTTGGTGCAAAGATTGCATGCAGACAATCACAGTGTTCATGTCTTGACACGATCTAAATCTAAAGCAGAAACAATTTTTCCAGCAAAAGACTTTCCAGGAATCAAGATAGCAGAAGAGCCAGAATGGAAAGATAGCGTTCAGGGCTCAACAGGGGTTGTGAATTTGGCTGGACTGCCCATAAGTACCCGGTGGTCTCCTGAGATAAAGAAGGAAATCAAGCAAAGCAGGATTCGAGTGACCTCAAAGGTTGCAGAATTGATAAACAGTGCACCAGATGATATTCGACCTAAAGTTTTTGTTAGTGCAACAGCTGTTGGTTATTATGGCACCAGTGAGACACAAGTCTTTGATGAACAAAGTCCATCAGGAAAGGATTACTTGGCTGAGGTTTGCAGGGAATGGGAATCCACAGCCCTAAAGGTAAATGGAGATGTTAGAGTGGCTCTAATTCGCATTGGTGTTGTTCTTGGTAAAGATGGTGGAGCATTAGTTAAAATGATACCTATCTTCAACTTGTTTGCTGGTGGACCTCTAGGCTCTGGAAAACAATGGTTCTCCTGGATTCATTTGGAAGACATTGTCAATTTAATATATGAAGCACTATCAAATCCATCTTACAAAGGTGTTATCAATGGAACTGCACCAAATCCTGTGCGATTGGCAGAATTGTGTGACCAGCTGGGAAATGTCTTGGGTCGTCCCTCATGGCTGCCAGTACCGGACTTTGCGCTCAAGGCTGTCCTTGGAGAAGGTGCTACTGTGGTTTTAGAAGGGCAGAGAGTGCTTCCTATTCAAGCTAAGAAGTTGGGTTTCCCATTCAAATATCCTTACGTGAAGGATGCCCTTCAAGCAATTCTTTCTTGA
>Glyma12g04100.1 sequence type=predicted peptide gene model=Glyma12g04100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEMCGATALTWSHTICPSLHLPRSVSTREARSFCVWCVSDQDPKGNKMIISVTGATGFIGRRLVQRLHADNHSVHVLTRSKSKAETIFPAKDFPGIKIAEEPEWKDSVQGSTGVVNLAGLPISTRWSPEIKKEIKQSRIRVTSKVAELINSAPDDIRPKVFVSATAVGYYGTSETQVFDEQSPSGKDYLAEVCREWESTALKVNGDVRVALIRIGVVLGKDGGALVKMIPIFNLFAGGPLGSGKQWFSWIHLEDIVNLIYEALSNPSYKGVINGTAPNPVRLAELCDQLGNVLGRPSWLPVPDFALKAVLGEGATVVLEGQRVLPIQAKKLGFPFKYPYVKDALQAILS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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