|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT4G34720 | AT | Annotation by Michelle Graham. TAIR10: ATPase, F0/V0 complex, subunit C protein | chr4:16568223-16569165 REVERSE LENGTH=164 | SoyBase | E_val: 4.00E-108 | ISS |
GO:0006007 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucose catabolic process | SoyBase | N/A | ISS |
GO:0015991 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ATP hydrolysis coupled proton transport | SoyBase | N/A | ISS |
GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
GO:0033177 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: proton-transporting two-sector ATPase complex, proton-transporting domain | SoyBase | N/A | ISS |
GO:0033179 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: proton-transporting V-type ATPase, V0 domain | SoyBase | N/A | ISS |
GO:0015078 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrogen ion transmembrane transporter activity | SoyBase | N/A | ISS |
GO:0016887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity | SoyBase | N/A | ISS |
GO:0046961 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: proton-transporting ATPase activity, rotational mechanism | SoyBase | N/A | ISS |
KOG0232 | KOG | Vacuolar H+-ATPase V0 sector, subunits c/c' | JGI | ISS | |
PTHR10263 | Panther | VACUOLAR ATP SYNTHASE PROTEOLIPID SUBUNIT | JGI | ISS | |
PF00137 | PFAM | ATP synthase subunit C | JGI | ISS | |
UniRef100_C6TBY6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TBY6_SOYBN | SoyBase | E_val: 2.00E-107 | ISS |
UniRef100_O22552 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: V-type proton ATPase 16 kDa proteolipid subunit n=1 Tax=Vigna radiata var. radiata RepID=VATL_VIGRR | SoyBase | E_val: 3.00E-106 | ISS |
Glyma12g04090 not represented in the dataset |
Glyma12g04090 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.12g036800 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g04090.3 sequence type=transcript gene model=Glyma12g04090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TAATGGAAATGGTTCCTTCCCCTCCACACTGTACGGTAACAGAGATCGGAACGTGGAACTGCGGAAACCGGAATATCTCACTTCTCAGATCAGATCAATCCGACGTCGTTGCAGTTATAATGGCTCCATTCAGCGGCGATGAGACGGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCGATGGGTGTGATGAGACCGGAGCTGGTGATGAAGTCTATTGTCCCTGTTGTTATGGCTGGAGTTTTGGGTATTTATGGCCTTATTATTGCTGTTATTATCAGTACTGGCATTAATCCCAAGGCCAAATCTTATTACCTCTTTGATGGTTATGCACATCTCTCCTCTGGTCTTGCCTGTGGGCTGGCTGGTCTCTCTGCTGGCATGGCTATTGGTATTGTTGGTGATGCTGGTGTTAGAGCCAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTCATTCTCATCTTTGCTGAGGCTCTTGCCCTGTATGGACTCATTGTTGGTATTATCCTGTCTTCTCGTGCTGGTCAGTCTAGAGCTGATTAAGAAAGATGTGCTGCAAAATATTCTTTGATCTCCCACCTGTTTTAAAACCTTCTTATTGTGAGGGCAAGGGGGGTAAATTGTTAGTTGTGAGGTTAGTGATGTTGGGATGGCACTTGCAAGGTTTAACAAATACATGTGAAAGCAGTAGCTGCACCAGTCATTTTTGTGTTTGTTTAACTAGTCTTTCTTTGCTTAATAAAGCTTCTTAAGCTTTTTTTTCCCTATGTGCCATATAATCTTAGACTTTATTTTTGCCTGCTGCCATTGTAATTTATATGTATTAATGGGTCTTTTAGTATTGGATGCTGGTGTAGCTAAACGTTGCCTTGTGTTTTGATCAGTTGTATAATCCGAATCGACATGGATGTTCTCAATAAAAGAGCATTTATTTTTTATCAATAATAAAAGAGCATTTTGAGTATTCTAATAGTATTTTGAATGATGAGATTGTTGAAGCAAGCA
>Glyma12g04090.2 sequence type=CDS gene model=Glyma12g04090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGAAGGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCGATGGGTGTGATGAGACCGGAGCTGGTGATGAAGTCTATTGTCCCTGTTGTTATGGCTGGAGTTTTGGGTATTTATGGCCTTATTATTGCTGTTATTATCAGTACTGGCATTAATCCCAAGGCCAAATCTTATTACCTCTTTGATGGTTATGCACATCTCTCCTCTGGTCTTGCCTGTGGGCTGGCTGGTCTCTCTGCTGGCATGGCTATTGGTATTGTTGGTGATGCTGGTGTTAGAGCCAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTCATTCTCATCTTTGCTGAGGCTCTTGCCCTGTATGGACTCATTGTTGGTATTATCCTGTCTTCTCGTGCTGGTCAGTCTAGAGCTGATTAA >Glyma12g04090.3 sequence type=CDS gene model=Glyma12g04090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAATGGTTCCTTCCCCTCCACACTGTACGGTAACAGAGATCGGAACGTGGAACTGCGGAAACCGGAATATCTCACTTCTCAGATCAGATCAATCCGACGTCGTTGCAGTTATAATGGCTCCATTCAGCGGCGATGAGACGGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCGATGGGTGTGATGAGACCGGAGCTGGTGATGAAGTCTATTGTCCCTGTTGTTATGGCTGGAGTTTTGGGTATTTATGGCCTTATTATTGCTGTTATTATCAGTACTGGCATTAATCCCAAGGCCAAATCTTATTACCTCTTTGATGGTTATGCACATCTCTCCTCTGGTCTTGCCTGTGGGCTGGCTGGTCTCTCTGCTGGCATGGCTATTGGTATTGTTGGTGATGCTGGTGTTAGAGCCAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTCATTCTCATCTTTGCTGAGGCTCTTGCCCTGTATGGACTCATTGTTGGTATTATCCTGTCTTCTCGTGCTGGTCAGTCTAGAGCTGATTAA
>Glyma12g04090.2 sequence type=predicted peptide gene model=Glyma12g04090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEGMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD* >Glyma12g04090.3 sequence type=predicted peptide gene model=Glyma12g04090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEMVPSPPHCTVTEIGTWNCGNRNISLLRSDQSDVVAVIMAPFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD*
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