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Report for Sequence Feature Glyma12g04090

Feature Type:gene_model
Chromosome:Gm12
Start:2671690
stop:2673502
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G34720AT Annotation by Michelle Graham. TAIR10: ATPase, F0/V0 complex, subunit C protein | chr4:16568223-16569165 REVERSE LENGTH=164 SoyBaseE_val: 4.00E-108ISS
GO:0006007GO-bp Annotation by Michelle Graham. GO Biological Process: glucose catabolic process SoyBaseN/AISS
GO:0015991GO-bp Annotation by Michelle Graham. GO Biological Process: ATP hydrolysis coupled proton transport SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0033177GO-cc Annotation by Michelle Graham. GO Cellular Compartment: proton-transporting two-sector ATPase complex, proton-transporting domain SoyBaseN/AISS
GO:0033179GO-cc Annotation by Michelle Graham. GO Cellular Compartment: proton-transporting V-type ATPase, V0 domain SoyBaseN/AISS
GO:0015078GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrogen ion transmembrane transporter activity SoyBaseN/AISS
GO:0016887GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity SoyBaseN/AISS
GO:0046961GO-mf Annotation by Michelle Graham. GO Molecular Function: proton-transporting ATPase activity, rotational mechanism SoyBaseN/AISS
KOG0232 KOG Vacuolar H+-ATPase V0 sector, subunits c/c' JGI ISS
PTHR10263Panther VACUOLAR ATP SYNTHASE PROTEOLIPID SUBUNIT JGI ISS
PF00137PFAM ATP synthase subunit C JGI ISS
UniRef100_C6TBY6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TBY6_SOYBN SoyBaseE_val: 2.00E-107ISS
UniRef100_O22552UniRef Annotation by Michelle Graham. Most informative UniRef hit: V-type proton ATPase 16 kDa proteolipid subunit n=1 Tax=Vigna radiata var. radiata RepID=VATL_VIGRR SoyBaseE_val: 3.00E-106ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g04090 not represented in the dataset

Glyma12g04090 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g036800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma12g04090.3   sequence type=transcript   gene model=Glyma12g04090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAATGGAAATGGTTCCTTCCCCTCCACACTGTACGGTAACAGAGATCGGAACGTGGAACTGCGGAAACCGGAATATCTCACTTCTCAGATCAGATCAATCCGACGTCGTTGCAGTTATAATGGCTCCATTCAGCGGCGATGAGACGGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCGATGGGTGTGATGAGACCGGAGCTGGTGATGAAGTCTATTGTCCCTGTTGTTATGGCTGGAGTTTTGGGTATTTATGGCCTTATTATTGCTGTTATTATCAGTACTGGCATTAATCCCAAGGCCAAATCTTATTACCTCTTTGATGGTTATGCACATCTCTCCTCTGGTCTTGCCTGTGGGCTGGCTGGTCTCTCTGCTGGCATGGCTATTGGTATTGTTGGTGATGCTGGTGTTAGAGCCAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTCATTCTCATCTTTGCTGAGGCTCTTGCCCTGTATGGACTCATTGTTGGTATTATCCTGTCTTCTCGTGCTGGTCAGTCTAGAGCTGATTAAGAAAGATGTGCTGCAAAATATTCTTTGATCTCCCACCTGTTTTAAAACCTTCTTATTGTGAGGGCAAGGGGGGTAAATTGTTAGTTGTGAGGTTAGTGATGTTGGGATGGCACTTGCAAGGTTTAACAAATACATGTGAAAGCAGTAGCTGCACCAGTCATTTTTGTGTTTGTTTAACTAGTCTTTCTTTGCTTAATAAAGCTTCTTAAGCTTTTTTTTCCCTATGTGCCATATAATCTTAGACTTTATTTTTGCCTGCTGCCATTGTAATTTATATGTATTAATGGGTCTTTTAGTATTGGATGCTGGTGTAGCTAAACGTTGCCTTGTGTTTTGATCAGTTGTATAATCCGAATCGACATGGATGTTCTCAATAAAAGAGCATTTATTTTTTATCAATAATAAAAGAGCATTTTGAGTATTCTAATAGTATTTTGAATGATGAGATTGTTGAAGCAAGCA

>Glyma12g04090.2   sequence type=CDS   gene model=Glyma12g04090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAGGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCGATGGGTGTGATGAGACCGGAGCTGGTGATGAAGTCTATTGTCCCTGTTGTTATGGCTGGAGTTTTGGGTATTTATGGCCTTATTATTGCTGTTATTATCAGTACTGGCATTAATCCCAAGGCCAAATCTTATTACCTCTTTGATGGTTATGCACATCTCTCCTCTGGTCTTGCCTGTGGGCTGGCTGGTCTCTCTGCTGGCATGGCTATTGGTATTGTTGGTGATGCTGGTGTTAGAGCCAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTCATTCTCATCTTTGCTGAGGCTCTTGCCCTGTATGGACTCATTGTTGGTATTATCCTGTCTTCTCGTGCTGGTCAGTCTAGAGCTGATTAA

>Glyma12g04090.3   sequence type=CDS   gene model=Glyma12g04090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAATGGTTCCTTCCCCTCCACACTGTACGGTAACAGAGATCGGAACGTGGAACTGCGGAAACCGGAATATCTCACTTCTCAGATCAGATCAATCCGACGTCGTTGCAGTTATAATGGCTCCATTCAGCGGCGATGAGACGGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCGATGGGTGTGATGAGACCGGAGCTGGTGATGAAGTCTATTGTCCCTGTTGTTATGGCTGGAGTTTTGGGTATTTATGGCCTTATTATTGCTGTTATTATCAGTACTGGCATTAATCCCAAGGCCAAATCTTATTACCTCTTTGATGGTTATGCACATCTCTCCTCTGGTCTTGCCTGTGGGCTGGCTGGTCTCTCTGCTGGCATGGCTATTGGTATTGTTGGTGATGCTGGTGTTAGAGCCAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTCATTCTCATCTTTGCTGAGGCTCTTGCCCTGTATGGACTCATTGTTGGTATTATCCTGTCTTCTCGTGCTGGTCAGTCTAGAGCTGATTAA

>Glyma12g04090.2   sequence type=predicted peptide   gene model=Glyma12g04090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEGMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD*

>Glyma12g04090.3   sequence type=predicted peptide   gene model=Glyma12g04090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEMVPSPPHCTVTEIGTWNCGNRNISLLRSDQSDVVAVIMAPFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD*







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