Glyma12g04050 - SoyBase

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Report for Sequence Feature Glyma12g04050

Feature Type:	gene_model
Chromosome:	Gm12
Start:	2651080
stop:	2655712
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g04050

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G38900	AT	Annotation by Michelle Graham. TAIR10: Basic-leucine zipper (bZIP) transcription factor family protein \| chr4:18139564-18141520 REVERSE LENGTH=547	SoyBase	E_val: 1.00E-169	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009410	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
PTHR13301	Panther	X-BOX TRANSCRIPTION FACTOR-RELATED	JGI		ISS
PF00170	PFAM	bZIP transcription factor	JGI		ISS
UniRef100_I1LPW5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LPW5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q0GPE9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BZIP transcription factor bZIP28 n=1 Tax=Glycine max RepID=Q0GPE9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g04050

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g04050

Paralog	Evidence	Comments
Glyma11g11791	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g04050 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g036400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g04050

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g04050

Limit To All Plant Sequences

>Glyma12g04050.2   sequence type=transcript   gene model=Glyma12g04050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTGTCCGAAATGAAATTGTTATTAAATTAAATTCACGCGTAGTAGTCATGAAATCCGTGTAGTAGTCATCGTCGTGGGTGTAGAGAGAGAAAGCAGAAAGAGAGTTCTTTTTTTCTTCTGGTTCTTGGTTTGGTTTGTTGCTCTTGTTCTAGAGAGAGAGAGAGGGATAAGTGCCTGCTCCTTCGGCATTTCCGTCAGACAAAGTTAACACTTCCAAGACCGATTAATCAATTCGCCCCTTCACCATTCCCTATTACATGAACTCTCCCAAGATTTTAATTTGAAGCTGAAAGAAGAATGGGAGAAAATGAAGAAGCGATGCAGAGGCTTCACTTTCTGAAGCAGCCGTTAAACATGGAGCAACTTAGCATCCCGCAATTCAACCCCTCGCAAATGCGCGCGAGGCAGCATCATCATCAGAATCAGTTCGACGGTGGGAACAGTAACAAGCGGGCTGGTATACCACCCTCCCACCCGCACCCGATCCCTCCCATTTCCCCCTACTCTCAGATCCCGGTGTCGCGTCAGCACAACAACATTTCCCCTACACCCACCCACACCCGATCACTCTCGCAGCCCTCGTTTTTCTCGCTCGACTCCCTCCCTCCCCTCAGCCCTTCCCCCTTCCGTGACTCCTCCTCGACTTCCGTGTCGGAAGCTGCTGACGTGTCCATGGAAGATCGCGACGTGAGTTCTCATTCCCTGTTGCCACCCTCACCTTTCTCCAGAACACTCAACAACAGTAATTTACCATTACCCCCTCGTAAAGCGCATAGACGCTCTAACAGTGACATTCCGTTTGGGTTTTCCACCGTTTTGCAATCCTCTCCGCCGCTTATCCCTCTTCGGAACCCCGTTTCAGCGAAACCTGCTCAGTTAGTCAAAAGAGAAACACCGTGGGACAGGGGTGTTGAGAATAATAATAATAATAATGTAGAGGGGTCCGGGGAGAAGAAATCCCCTGAAGGGGAAGTGGTGGATGATCTTTTCTCTGCTTACATGAATTTGGATAGCTTTGATGCGTTGAACTCTTCTGGGACAGATGATAAAAATGGAGGCGAAAATCGCGATGATTTGGATAGTAGAGCGAGTGGGACTAAGACCAATGGTGGTGACAGTAGTGATAATGAGGCCGAAAGTAGTGTTAATGAGAGTGGGGATGGTGGGGTGAGGCAGGGAGGGAATGAGAAGAGGGAAGGGATGAAGAGGAGTGCTGGGGGTGAGATTGCGCCCACCACTAGGCACTATAGGAGTGTCTCCATGGATAGTTTCATTGGGAAGTTGAATTTCGATGAGGAGTCGCCCAAGCTGCCTCCTTCCCCCGGGCAGAGAAGTGCTCTGATGTCGCCTGCTGGTGGAATTGATGGGAATTCGGCGGCCTTCAGCTTGGAGTTTGGAAATGGGGAGTTCAGTGGGCCTGAACTGAAGAAAATTATGGCCAATGAAAAGCTTGCTGAGATTGCCTTGATCGATCCAAAGCGTGCCAAAAGGATTTTGGCCAACCGGCAATCGGCTGCGCGATCCAAAGAGCGGAAGATGCGGTACATTTCGGAGCTAGAACACAAGGTTCAGACTCTACAGACAGAAGCCACCACACTATCTGCACAGCTTACTCTGTTACAGAGAGATTCGGCTGGACTCACTAACCAGAATAGTGAGTTGAAGTTTCGCCTTCAATCCATGGAACAACAAGCAAAGCTTCGAGATGGAATTCCAGAGATAATGCAGAGAGGACGACCCAATTCATTGCTAATGTTTAGGTGACCTACTCAGTTATTCGTGTCCAAATTTCTTGGGGAGAGTTGAGAAATATTGTGAGCGAAAACCAAGTCAACTACCTTTTCTTTACACAAGTCATTTGTTGTAGTCAAGAATCAAGATGACTATTAATGAAGCAATCCCATTGTAGCATCTGCTTGATATGCCCTTATCTGCACTTGCACCCTTCTGCTGAATATGATTATGCATGAATTTCCTTTGCATAGAAGCTCATTATGTGAAGTTCTTTCGAGAGTTTTTTTGAAAGTGATACGTGTTCATGGAGTAGTGACCTTTGTGTGTGCATGCTTGAATTTATTTTATTTTTTCTGATGCTTACTCCTTTTCTATTGGAGTTATCAATAAAAGACATTAGACATGGCAACGGGGCGGGGACGGGTATTGCCTCCCCAGTCCCTGACCCCGACTCCTCAACATATCCCCGTCGGGTATTGGATATTCCCGTCCCCGGTTTAGATATGTATTTTTTTTTTGTAAAAAAATTATATTAAAAATTTGATTTAAAAAATAATTGATACGGGAATGGATATGGGATGAGTGGTGACATCCCTGTCCTCGACCCCAACCTTGGTTTAAAAAATTGGGTAATCTCTGAACCCAAACCCATACCCGGTCAACTCGGGTATTTCCCATCAAAATCAGGACAGGTTTGGACGGATACTCACACGTACGGGTTTCATTGTCATGCCTAAAAGACATACTTGCCTGCTACATTTTCATACAATTACTAGTAGCTGCCATTTGTACCTCTATTAACATTTGGAAACTAGTTATGACTTTATAGATTGCTTCCTTCTGACTAAGTCTGTGCCCTGTATTTTCTTCTAATAGCTCTAAATGAGGCGCTTACTGCTGAGGTTCAAAGACTAAAGCTTGCCACAGCTGAACTAAGTGGCGATTCGCATGGTTCTGGCTGTTTGATTCCTCAACATTCTGTCAATCCTCTGATGTTCCAGCAACAGCAGCAGCCTCCTACTGCATCCCAACAAAACATTCATCTTCAACAGCAGCAACAGCAGCAGCATCAGAATGGTAATGCCAACTCAAATTCCGACTTAAAACAATAGTTTGGGAAGGAGTTCCTGCAGCTGCATGGTTGGCTCACTGCAGTCAGTTTCGCATATTTACAAAAAGGTTTTCCTTAGTTGTTATGGTCTCAAGTTTGATTTGCATTATTACCTGTCCAGCTCAGACAGAAAGTCCATATACAAGTTCTAATTCCTGTCTTTTATCTAAATTATTATAGAGCATATTTAATTTCAGTATATATATTAAATTGTAAGCATTATTTGGACATGATTTGTTTTATGATGGCATTTTAGAGAAACTGTTCAATCTTTCTTTTTGTAAAGAATGACCATTCTGTTGTTGTGGATCTGTTTCAATTTTCTAATCTGTTCGGGGTAATTTAATCCAAAA

Coding sequences of Glyma12g04050

Limit To All Plant Sequences

>Glyma12g04050.1   sequence type=CDS   gene model=Glyma12g04050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGAAAATGAAGAAGCGATGCAGAGGCTTCACTTTCTGAAGCAGCCGTTAAACATGGAGCAACTTAGCATCCCGCAATTCAACCCCTCGCAAATGCGCGCGAGGCAGCATCATCATCAGAATCAGTTCGACGGTGGGAACAGTAACAAGCGGGCTGGTATACCACCCTCCCACCCGCACCCGATCCCTCCCATTTCCCCCTACTCTCAGATCCCGGTGTCGCGTCAGCACAACAACATTTCCCCTACACCCACCCACACCCGATCACTCTCGCAGCCCTCGTTTTTCTCGCTCGACTCCCTCCCTCCCCTCAGCCCTTCCCCCTTCCGTGACTCCTCCTCGACTTCCGTGTCGGAAGCTGCTGACGTGTCCATGGAAGATCGCGACGTGAGTTCTCATTCCCTGTTGCCACCCTCACCTTTCTCCAGAACACTCAACAACAGTAATTTACCATTACCCCCTCGTAAAGCGCATAGACGCTCTAACAGTGACATTCCGTTTGGGTTTTCCACCGTTTTGCAATCCTCTCCGCCGCTTATCCCTCTTCGGAACCCCGTTTCAGCGAAACCTGCTCAGTTAGTCAAAAGAGAAACACCGTGGGACAGGGGTGTTGAGAATAATAATAATAATAATGTAGAGGGGTCCGGGGAGAAGAAATCCCCTGAAGGGGAAGTGGTGGATGATCTTTTCTCTGCTTACATGAATTTGGATAGCTTTGATGCGTTGAACTCTTCTGGGACAGATGATAAAAATGGAGGCGAAAATCGCGATGATTTGGATAGTAGAGCGAGTGGGACTAAGACCAATGGTGGTGACAGTAGTGATAATGAGGCCGAAAGTAGTGTTAATGAGAGTGGGGATGGTGGGGTGAGGCAGGGAGGGAATGAGAAGAGGGAAGGGATGAAGAGGAGTGCTGGGGGTGAGATTGCGCCCACCACTAGGCACTATAGGAGTGTCTCCATGGATAGTTTCATTGGGAAGTTGAATTTCGATGAGGAGTCGCCCAAGCTGCCTCCTTCCCCCGGGCAGAGAAGTGCTCTGATGTCGCCTGCTGGTGGAATTGATGGGAATTCGGCGGCCTTCAGCTTGGAGTTTGGAAATGGGGAGTTCAGTGGGCCTGAACTGAAGAAAATTATGGCCAATGAAAAGCTTGCTGAGATTGCCTTGATCGATCCAAAGCGTGCCAAAAGGATTTTGGCCAACCGGCAATCGGCTGCGCGATCCAAAGAGCGGAAGATGCGGTACATTTCGGAGCTAGAACACAAGGTTCAGACTCTACAGACAGAAGCCACCACACTATCTGCACAGCTTACTCTGTTACAGAGAGATTCGGCTGGACTCACTAACCAGAATAGTGAGTTGAAGTTTCGCCTTCAATCCATGGAACAACAAGCAAAGCTTCGAGATGCTCTAAATGAGGCGCTTACTGCTGAGGTTCAAAGACTAAAGCTTGCCACAGCTGAACTAAGTGGCGATTCGCATGGTTCTGGCTGTTTGATTCCTCAACATTCTGTCAATCCTCTGATGTTCCAGCAACAGCAGCAGCCTCCTACTGCATCCCAACAAAACATTCATCTTCAACAGCAGCAACAGCAGCAGCATCAGAATGGTAATGCCAACTCAAATTCCGACTTAAAACAATAG

>Glyma12g04050.2   sequence type=CDS   gene model=Glyma12g04050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGAAAATGAAGAAGCGATGCAGAGGCTTCACTTTCTGAAGCAGCCGTTAAACATGGAGCAACTTAGCATCCCGCAATTCAACCCCTCGCAAATGCGCGCGAGGCAGCATCATCATCAGAATCAGTTCGACGGTGGGAACAGTAACAAGCGGGCTGGTATACCACCCTCCCACCCGCACCCGATCCCTCCCATTTCCCCCTACTCTCAGATCCCGGTGTCGCGTCAGCACAACAACATTTCCCCTACACCCACCCACACCCGATCACTCTCGCAGCCCTCGTTTTTCTCGCTCGACTCCCTCCCTCCCCTCAGCCCTTCCCCCTTCCGTGACTCCTCCTCGACTTCCGTGTCGGAAGCTGCTGACGTGTCCATGGAAGATCGCGACGTGAGTTCTCATTCCCTGTTGCCACCCTCACCTTTCTCCAGAACACTCAACAACAGTAATTTACCATTACCCCCTCGTAAAGCGCATAGACGCTCTAACAGTGACATTCCGTTTGGGTTTTCCACCGTTTTGCAATCCTCTCCGCCGCTTATCCCTCTTCGGAACCCCGTTTCAGCGAAACCTGCTCAGTTAGTCAAAAGAGAAACACCGTGGGACAGGGGTGTTGAGAATAATAATAATAATAATGTAGAGGGGTCCGGGGAGAAGAAATCCCCTGAAGGGGAAGTGGTGGATGATCTTTTCTCTGCTTACATGAATTTGGATAGCTTTGATGCGTTGAACTCTTCTGGGACAGATGATAAAAATGGAGGCGAAAATCGCGATGATTTGGATAGTAGAGCGAGTGGGACTAAGACCAATGGTGGTGACAGTAGTGATAATGAGGCCGAAAGTAGTGTTAATGAGAGTGGGGATGGTGGGGTGAGGCAGGGAGGGAATGAGAAGAGGGAAGGGATGAAGAGGAGTGCTGGGGGTGAGATTGCGCCCACCACTAGGCACTATAGGAGTGTCTCCATGGATAGTTTCATTGGGAAGTTGAATTTCGATGAGGAGTCGCCCAAGCTGCCTCCTTCCCCCGGGCAGAGAAGTGCTCTGATGTCGCCTGCTGGTGGAATTGATGGGAATTCGGCGGCCTTCAGCTTGGAGTTTGGAAATGGGGAGTTCAGTGGGCCTGAACTGAAGAAAATTATGGCCAATGAAAAGCTTGCTGAGATTGCCTTGATCGATCCAAAGCGTGCCAAAAGGATTTTGGCCAACCGGCAATCGGCTGCGCGATCCAAAGAGCGGAAGATGCGGTACATTTCGGAGCTAGAACACAAGGTTCAGACTCTACAGACAGAAGCCACCACACTATCTGCACAGCTTACTCTGTTACAGAGAGATTCGGCTGGACTCACTAACCAGAATAGTGAGTTGAAGTTTCGCCTTCAATCCATGGAACAACAAGCAAAGCTTCGAGATGGAATTCCAGAGATAATGCAGAGAGGACGACCCAATTCATTGCTAATGTTTAGGTGA

Predicted protein sequences of Glyma12g04050

Limit To All Plant Sequences

>Glyma12g04050.1   sequence type=predicted peptide   gene model=Glyma12g04050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGENEEAMQRLHFLKQPLNMEQLSIPQFNPSQMRARQHHHQNQFDGGNSNKRAGIPPSHPHPIPPISPYSQIPVSRQHNNISPTPTHTRSLSQPSFFSLDSLPPLSPSPFRDSSSTSVSEAADVSMEDRDVSSHSLLPPSPFSRTLNNSNLPLPPRKAHRRSNSDIPFGFSTVLQSSPPLIPLRNPVSAKPAQLVKRETPWDRGVENNNNNNVEGSGEKKSPEGEVVDDLFSAYMNLDSFDALNSSGTDDKNGGENRDDLDSRASGTKTNGGDSSDNEAESSVNESGDGGVRQGGNEKREGMKRSAGGEIAPTTRHYRSVSMDSFIGKLNFDEESPKLPPSPGQRSALMSPAGGIDGNSAAFSLEFGNGEFSGPELKKIMANEKLAEIALIDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSAGLTNQNSELKFRLQSMEQQAKLRDALNEALTAEVQRLKLATAELSGDSHGSGCLIPQHSVNPLMFQQQQQPPTASQQNIHLQQQQQQQHQNGNANSNSDLKQ*

>Glyma12g04050.2   sequence type=predicted peptide   gene model=Glyma12g04050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGENEEAMQRLHFLKQPLNMEQLSIPQFNPSQMRARQHHHQNQFDGGNSNKRAGIPPSHPHPIPPISPYSQIPVSRQHNNISPTPTHTRSLSQPSFFSLDSLPPLSPSPFRDSSSTSVSEAADVSMEDRDVSSHSLLPPSPFSRTLNNSNLPLPPRKAHRRSNSDIPFGFSTVLQSSPPLIPLRNPVSAKPAQLVKRETPWDRGVENNNNNNVEGSGEKKSPEGEVVDDLFSAYMNLDSFDALNSSGTDDKNGGENRDDLDSRASGTKTNGGDSSDNEAESSVNESGDGGVRQGGNEKREGMKRSAGGEIAPTTRHYRSVSMDSFIGKLNFDEESPKLPPSPGQRSALMSPAGGIDGNSAAFSLEFGNGEFSGPELKKIMANEKLAEIALIDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSAGLTNQNSELKFRLQSMEQQAKLRDGIPEIMQRGRPNSLLMFR*

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