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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G16800 | AT | Annotation by Michelle Graham. TAIR10: high-affinity nickel-transport family protein | chr2:7285824-7287188 FORWARD LENGTH=372 | SoyBase | E_val: 3.00E-148 | ISS |
| GO:0000394 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
| GO:0009086 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process | SoyBase | N/A | ISS |
| GO:0009220 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0009616 | GO-bp | Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing | SoyBase | N/A | ISS |
| GO:0010050 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative phase change | SoyBase | N/A | ISS |
| GO:0015675 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nickel cation transport | SoyBase | N/A | ISS |
| GO:0030001 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metal ion transport | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0015099 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nickel cation transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| PF03824 | PFAM | High-affinity nickel-transport protein | JGI | ISS | |
| UniRef100_G7JMC5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: High-affinity nickel-transport family protein, putative n=1 Tax=Medicago truncatula RepID=G7JMC5_MEDTR | SoyBase | E_val: 3.00E-175 | ISS |
| UniRef100_I1LPU0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LPU0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g03750 not represented in the dataset |
Glyma12g03750 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g35260 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g033600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g03750.1 sequence type=CDS gene model=Glyma12g03750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATAGGCTTCTATCTTCTTGTTCTTCTTCCCTTAACACCAATCTCAAGCCCTTTTCTCTTCTCCCTCGATTTGACTCCGTCAGATTCAACCCTTTCTCATCAACGCGCTGTTCCTTCACCTCAATTTCATCCAAGCATGAAACCCCACCTCCATTATCGTCTTCTCCTCCAAAAACCCTACCACCCCTTTCCCCCTCTCCACTCATTCATTTTCATGCCTCCGTGCCCCCATCCCAACCCCTCACTCCGAATAATTTCCAAAATCCAAAGGCAATAACAGCTCGAACGTTTGCAATACTCTCTTCTCTTGTTTTGCTCTTAATCCAACCAGCTTTTGCTCCGGCAGCTTTTGCCACGTTTCAAAATGCTGCCAAGACTGGTGGCCCTGCTGCTGCCGCAGTTGGTGGAAAACTAATCCGCACTGAGCTTCTAACTAGTGCTTGGACTGGTTTCTTTGCTGGCTGCTTGCACACACTGTCAGGGCCTGACCACCTTGCAGCTTTGGCTCCATTGTCAATTGGCCGAACCCGAATGGAGAGTGCTGCTGTTGGAGCCCTTTGGGGTTGTGGCCATGATGCCGGTCAAGTTATCTTTGGCTTAATATTTTTGCTCTTAAAAGATCGACTTCACATTGAAATTATCCGAACTTGGGGCACCCGAGTGGTTGGCCTTACCCTGCTAGTAATTGGTGCTATGGGAATTAAGGAAGCTTCAGAAGTGCCTACCCCGTGTGTTGCCTTAGAAAATGGTGAATGTGATGTCAGTGTCTATGAATCACGCGATAGTAATCCTGTTGTAGGAAAGAAGAAGATTGGTTTTGCTACTTTTGCCACTGGAATAGTTCACGGACTGCAACCAGATGCATTGATGATGGTGTTGCCTGCCCTTGCTCTACCCTCACGCTTGGCTGGTGCTGCATTTCTCATCATGTTCTTACTTGGAACTGTTGTTGCAATGGGGAGCTATACGGTATTTATCGGTTCATGTAGCGAGGCACTAAAAGATAGAGTACCTAGAATAACTGAGAAACTCACTTGGGCTTCTTCTCTTATTGCAATAGCCCTCGGATTTGCCATCATCATTAGCCAGTTTTTTGGGTTTAGCCTGTATTAG
>Glyma12g03750.1 sequence type=predicted peptide gene model=Glyma12g03750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDRLLSSCSSSLNTNLKPFSLLPRFDSVRFNPFSSTRCSFTSISSKHETPPPLSSSPPKTLPPLSPSPLIHFHASVPPSQPLTPNNFQNPKAITARTFAILSSLVLLLIQPAFAPAAFATFQNAAKTGGPAAAAVGGKLIRTELLTSAWTGFFAGCLHTLSGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVIFGLIFLLLKDRLHIEIIRTWGTRVVGLTLLVIGAMGIKEASEVPTPCVALENGECDVSVYESRDSNPVVGKKKIGFATFATGIVHGLQPDALMMVLPALALPSRLAGAAFLIMFLLGTVVAMGSYTVFIGSCSEALKDRVPRITEKLTWASSLIAIALGFAIIISQFFGFSLY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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