SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G16780 | AT | Annotation by Michelle Graham. TAIR10: Transducin family protein / WD-40 repeat family protein | chr2:7281615-7283583 REVERSE LENGTH=415 | SoyBase | E_val: 0 | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0006260 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication | SoyBase | N/A | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0007129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: synapsis | SoyBase | N/A | ISS |
| GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0008283 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell proliferation | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0010564 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle process | SoyBase | N/A | ISS |
| GO:0051322 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anaphase | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0080008 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG0264 | KOG | Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 | JGI | ISS | |
| PTHR22850 | Panther | WD40 REPEAT FAMILY | JGI | ISS | |
| PTHR22850:SF43 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| PF12265 | PFAM | Histone-binding protein RBBP4 or subunit C of CAF1 complex | JGI | ISS | |
| UniRef100_G7JMD2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: WD-40 repeat-containing protein MSI3 n=1 Tax=Medicago truncatula RepID=G7JMD2_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LPT2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LPT2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g03700 not represented in the dataset |
Glyma12g03700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g033100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g03700.1 sequence type=CDS gene model=Glyma12g03700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGAAGAGTACGAGGAAGGTGGTGAGGTTGAAGAAGAGTTCTCCGTTTGGAAGAAGAACACTCCTCTATTGTACGATTTCTTCATTTCTCACCCTCTTCAATGGCCTTCTCTCACCGTTCACTGGCTTCCCTCCTCTCCCCAACCTCACTCCCATCCTTCCTTCAATCTCCACAAACTTCTTCTCGCCACTCACACTTCCGAAGGCGAATCAAACTTCCTCATGCTCGCTGACGCATCCCTCCCCGTAGACACCTCACAACACATCGTCGCCACCGATCCGAACAACCCCGTTCTTCCCAAGGTGGAGATTTCTCAAAGGATTTCTGTTGATGGGGAGGTGAATCGAGCGCGGTGCATGCCGCAGAACCCTAGTATTGTTGGTGCCAAGACTTGTAATTCCGAGGTTTATGTGTTTGATTTCACCAAGGAACGTGGGAGTGCGTGTGACCCTGATTTGAGGTTAAGGGGTCATGATAAAGAGGGTTATGGTTTGTCTTGGAGCCCTTTTAAGAACGGGTATCTTTTGAGTGGTTCGCATGACCATAAGGTTTGCTTGTGGGATGTGCCTGGTGCCTCTCAAGAGAAGGTGCTTGATGCACTTCATATTTATGAGGGTCATGAGAATGTGGTTGAAGATGTGTCATGGAATTTGAAGGATGAGAATATGTTTGGGTCCAGTGGAGATGACTGCAAATTGATCATTTGGGACTTGCGGACAAACAAAGCCCAACAATCAGTCAAACCACATGAAAAGGAGGTGAACTTTCTTTCTTTCAATCCATATAATGAATGGATTTTGGCTACAGCATCTTCAGATACAGATGTTGGCCTCTTTGATACACGGAAGCTGGCAGTGCCGCTACATATTTTAAGTAGCCACACAGATGAAGTTTTCCAGGTAGAGTGGGATCCTAATCATGAGACTGTGTTGGCATCTTCTGGTGCTGACAGACGGCTGATGGTTTGGGACCTTAACAGAGTTGGTGGTGAGCAGATAGAGGGAGATGGTGAAGGTGGCCCTCCTGAACTACTATTCTCTCACGGGGGTCACAAAGGGAAAATATCAGATTTTTCATGGAACAGAAATCAGCCATGGGTTATCTCAAGTGTAGCTGAGGACAATTCTTTCCATGTCTGGCAAATGGCTGAGAGCATTTACAATGACGGAGATGATGACAACATGTGGACGGCCGATGATTAA
>Glyma12g03700.1 sequence type=predicted peptide gene model=Glyma12g03700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAEEYEEGGEVEEEFSVWKKNTPLLYDFFISHPLQWPSLTVHWLPSSPQPHSHPSFNLHKLLLATHTSEGESNFLMLADASLPVDTSQHIVATDPNNPVLPKVEISQRISVDGEVNRARCMPQNPSIVGAKTCNSEVYVFDFTKERGSACDPDLRLRGHDKEGYGLSWSPFKNGYLLSGSHDHKVCLWDVPGASQEKVLDALHIYEGHENVVEDVSWNLKDENMFGSSGDDCKLIIWDLRTNKAQQSVKPHEKEVNFLSFNPYNEWILATASSDTDVGLFDTRKLAVPLHILSSHTDEVFQVEWDPNHETVLASSGADRRLMVWDLNRVGGEQIEGDGEGGPPELLFSHGGHKGKISDFSWNRNQPWVISSVAEDNSFHVWQMAESIYNDGDDDNMWTADD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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