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Report for Sequence Feature Glyma12g03670

Feature Type:gene_model
Chromosome:Gm12
Start:2475612
stop:2477525
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G53300AT Annotation by Michelle Graham. TAIR10: ubiquitin-conjugating enzyme 10 | chr5:21632802-21633989 REVERSE LENGTH=148 SoyBaseE_val: 2.00E-102ISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
GO:0016881GO-mf Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity SoyBaseN/AISS
GO:0031625GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin protein ligase binding SoyBaseN/AISS
KOG0417 KOG Ubiquitin-protein ligase JGI ISS
PTHR24068Panther FAMILY NOT NAMED JGI ISS
PF00179PFAM Ubiquitin-conjugating enzyme JGI ISS
UniRef100_G7JMD8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin carrier protein n=1 Tax=Medicago truncatula RepID=G7JMD8_MEDTR SoyBaseE_val: 3.00E-104ISS
UniRef100_I1LPS4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LPS4_SOYBN SoyBaseE_val: 7.00E-106ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g03670 not represented in the dataset

Glyma12g03670 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma11g11520 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g032800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma12g03670.1   sequence type=CDS   gene model=Glyma12g03670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCCAAGAGAATACTGAAGGAGCTCAAGGACTTACAGAGAGATCCACCAACTTCATGCAGTGCAGGACCTGTGGGTGAGGACATGTTCCATTGGCAAGCAACCATCATTGGTCCAAATGACAGTCCCTATGCTGGTGGTGTTTTCCTTGTGACCATCCATTTCCCTCCCGATTATCCCTTCAAACCTCCCAAGGTTGCATTCAGGACCAAGGTTTTCCATCCCAACATTAACAGCAATGGCAATATTTGCCTGGACATACTCAAAGAACAATGGAGTCCTGCTCTCACCATATCCAAGGTGCTGCTCTCTATATGTTCTTTGCTAACGGATCCAAATCCTGATGACCCTTTGGTGCCTGAAATTGCTCATATGTGCAAGACCGACAAAGTCAAGTATGAGTCCACTGCTAGAAGCTGGACCCAGAAGTATGCCATGGGCTAA

>Glyma12g03670.1   sequence type=predicted peptide   gene model=Glyma12g03670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASKRILKELKDLQRDPPTSCSAGPVGEDMFHWQATIIGPNDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKVKYESTARSWTQKYAMG*







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