Glyma12g03650 - SoyBase

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Report for Sequence Feature Glyma12g03650

Feature Type:	gene_model
Chromosome:	Gm12
Start:	2456892
stop:	2462516
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g03650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G16730	AT	Annotation by Michelle Graham. TAIR10: glycosyl hydrolase family 35 protein \| chr2:7261986-7266105 REVERSE LENGTH=848	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0005990	GO-bp	Annotation by Michelle Graham. GO Biological Process: lactose catabolic process	SoyBase	N/A	ISS
GO:0019513	GO-bp	Annotation by Michelle Graham. GO Biological Process: lactose catabolic process, using glucoside 3-dehydrogenase	SoyBase	N/A	ISS
GO:0019515	GO-bp	Annotation by Michelle Graham. GO Biological Process: lactose catabolic process via UDP-galactose	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0004565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: beta-galactosidase activity	SoyBase	N/A	ISS
GO:0030246	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding	SoyBase	N/A	ISS
GO:0043169	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation binding	SoyBase	N/A	ISS
KOG0496	KOG	Beta-galactosidase	JGI		ISS
PTHR23421	Panther	BETA-GALACTOSIDASE RELATED	JGI		ISS
PTHR23421:SF2	Panther	BETA-GALACTOSIDASE	JGI		ISS
PF01301	PFAM	Glycosyl hydrolases family 35	JGI		ISS
PF02140	PFAM	Galactose binding lectin domain	JGI		ISS
PF02837	PFAM	Glycosyl hydrolases family 2, sugar binding domain	JGI		ISS
UniRef100_I1LPS3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Beta-galactosidase (Fragment) n=1 Tax=Glycine max RepID=I1LPS3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1LPS3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Beta-galactosidase (Fragment) n=1 Tax=Glycine max RepID=I1LPS3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g03650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g03650 not represented in the dataset	Glyma12g03650 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g03650

Paralog	Evidence	Comments
Glyma11g11500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g03650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g032600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g03650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g03650

Limit To All Plant Sequences

>Glyma12g03650.2   sequence type=transcript   gene model=Glyma12g03650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTCTCAATTGAGCCGCAGTATGATTACATAAAGTTCATGAAGCTCGTTCAAAAGAAAGGAATGTATGTAACCCTCAGGGTTGGGCCTTTCATCCAAGCTGAATGGAACCACGGAGGACTTCCATATTGGCTGAGAGAGATCCCTGATATCATATTCCGCTCTAACAATGAACCCTTTAAGAAGCACATGAAAGAATATGTATCAACTGTTGTAAAAACGTTGAAAGAGGCGAAGCTCTTTGGTCCCCAAGGAGGCCCCATCATCTTGGCACAGATTGAGAATGAGTACAACCATATCCAACGTGCTTTCAGAGAGGAAGGAGATAATTATGTCCAATGGGCTGCGAAAATGGCAGTGTCGCTGGATGTTGGAGTTCCATGGATCATGTGCAAGCAGAGAGATGCTCCTGATCCAGTGATTAATGCTTGCAATGGAAGGCACTGTGGTGATACCTTTGCAGGCCCCAACAAACCTTACAAGCCTTCTCTATGGACTGAAAACTGGACGGTTCAGTATAGAGTGTTTGGAGATCCACCATCCCGAAGATCAGCAGAAGACATTGCCTTTTCAGTTGCTCGCTTCTTCTCTAAGAATGGATCTTTGGTGAACTATTATATGTACCATGGTGGAACAAATTTTGGTAGAACAAGCTCTGCCTTCACTACAACCCAATATTATGATGAAGCCCCTCTTGATGAGTACGGTATGCAGAGAGAACCAAAATGGAGTCACTTGAGGGATGTGCACAAGGCATTGAGCCTATGCAAGAAGGCCTTGTTCAATGGTGAGTCTACCGTCACAAAACTGAGCCAACATCACGAGACTATAGTTTTCGAGAAGCCAGGAAGTGATTTGTGCGCTGCTTTCCTCACCAACAACCACACCTTGACACCAGCAACCATAAAATTCAGAGGTACTGACTACTATATGCCACCACGTTCCATTAGCATACTCCCTGACTGCAAGACTGTTGTCTTCAACACTCAATTTATTGCTTCACAACATAATTCAAGGAACTTCAAGAGGTCAATGGCAGCAAACAATCATAAGTGGGAGGTGTATTCTGAGAACATTCCTACCACCAAGCAAATTCCAACCAATGAAAAGATTCCTACAGAGCTTTACAGTTTGCTTAAAGACACCAGCGACTATGCATGGTACACCACCAGCGTGGAACTGGGTCCAGAAGACTTGCCAAAGAAGAATGATATATCCCCCGTTCTCCGTATTATGAGTCTTGGCCATTCATTGGTTGCCTTTGTAAATGGAGAATTCATTGGATCAAATCACGGTTCCCATGAAGAGAAAAGTTTTGAATTCCAGAAACCTGTAACCTTGAAGGTTGGAGTTAACCAAATAGCTATCTTGGCTTGCACTGTGGGACTCCCCGACAGTGGAGCATACATGGAGCACAGGTTCGCTGGACCAAAGTCTATTTTCATCCTTGGTCTCAACTCTGGAAAAATTGATCTCGCTTCTAATGGTTGGGGTCATAAGGTTGGTATCAAAGGTGAGGAGCTTGGCATTTTCACTGAAGAGGGGTCAAAGAAAGTACAATGGAAAGAAGCCAAGGGATCTGGACCAGCTCTCTCCTGGTACAAGACAAATTTTGAAACCCCGGAGGGAACGGATCCTGTTGCCATCAGAATGACTGGTATGGGGAAGGGAATGATTTGGATCAATGGCAAAAGCATTGGTCGTCACTGGATGAGTTACCTCTCTCCTCTTGGAATGCCTACTCAGTCAGAGTACCACATCCCCAGAGCTTTCTTCAATCCAAAAGACAACTTGATTGTTGTGTTTGAGGAAGAGATAGCAAATCCAGAAAAGGTTGAGATCCTAACTGTAGACAGAGATACAATATGCAGTTTCATCACAGAGAATCACCCCCCCAATGTGAAGTCATGGGCAGTTAAGAGCGAGAAGTTCCAGGCTCTTTCGAATAATCTGGTGCCAACAGCTACACTCAAATGTCCAAACCGCAGAACCATTAAGGCTGTGGAGTTTGCAAGCTTTGGTGATCCTGCTGGTGTATGTGGAGCCTATACTTTAGGCAAATGTAATGCACCTTCCACCAAGCAGATTGTTGAGAAGCATTGCCTTGGAAAACAATCCTGTAATGTTCCAATTGACAAGGACGCCTTCACTAAGGGCCAAGATGCTTGCCGAAATATGGTGAAGGCACTTGCAATCCAAGTGAAGTGTGAAGCCTAGCAACCTGCCACTAGGTGAAGTAGAGTTGGGTGGGTGGCCACGTTAGTGATTTGATTGTTGAAGTGGAGTCCATAGGCCCACATTTTAGTTTAGCCTTTGTTTTGTAGCACATGATACCTGAAATCGGTGTCTTTTACTTAACAAGCAACATTTTGTTTGTTCTGTTTACATTAAAAATGTAGAAAAAATTATGATTCAATTTTGTTTCATATTCGATCGCCGGCAACTTGTCATCCTTCTCTGAATGATAAAAGTCCC

Coding sequences of Glyma12g03650

Limit To All Plant Sequences

>Glyma12g03650.1   sequence type=CDS   gene model=Glyma12g03650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTACTTGTCACTAATGGAATTGCAGAAACAGTTTCTGAGCAACTATTGCATCTAATTAGAAGGAGGGTCACTTCGATCAAACCACACTTTACATCTTTCTCTTTCTCTCCATTCTGCACATACAATCTTAACATGTCAATTCTCAAAGTTCTTTTGATTACCATCATTGTTTCATTGGTCATTTCTGCCAGCAGCGCCCATGATGAAGACAACAAGAAGATGACTTCTGAAAGCGATGACAACGACAAAGACAAGAAAAAGACTGTGACTTATGATGGCAGGTCTCTCATTATCAATGGAAGACGAGAGCTTCTCTTCTCCGGTTCCATTCATTACCCACGAAGCACCCCCGAGTTCTCAATTGAGCCGCAGTATGATTACATAAAGTTCATGAAGCTCGTTCAAAAGAAAGGAATGTATGTAACCCTCAGGGTTGGGCCTTTCATCCAAGCTGAATGGAACCACGGAGGACTTCCATATTGGCTGAGAGAGATCCCTGATATCATATTCCGCTCTAACAATGAACCCTTTAAGAAGCACATGAAAGAATATGTATCAACTGTTGTAAAAACGTTGAAAGAGGCGAAGCTCTTTGGTCCCCAAGGAGGCCCCATCATCTTGGCACAGATTGAGAATGAGTACAACCATATCCAACGTGCTTTCAGAGAGGAAGGAGATAATTATGTCCAATGGGCTGCGAAAATGGCAGTGTCGCTGGATGTTGGAGTTCCATGGATCATGTGCAAGCAGAGAGATGCTCCTGATCCAGTGATTAATGCTTGCAATGGAAGGCACTGTGGTGATACCTTTGCAGGCCCCAACAAACCTTACAAGCCTTCTCTATGGACTGAAAACTGGACGGTTCAGTATAGAGTGTTTGGAGATCCACCATCCCGAAGATCAGCAGAAGACATTGCCTTTTCAGTTGCTCGCTTCTTCTCTAAGAATGGATCTTTGGTGAACTATTATATGTACCATGGTGGAACAAATTTTGGTAGAACAAGCTCTGCCTTCACTACAACCCAATATTATGATGAAGCCCCTCTTGATGAGTACGGTATGCAGAGAGAACCAAAATGGAGTCACTTGAGGGATGTGCACAAGGCATTGAGCCTATGCAAGAAGGCCTTGTTCAATGGTGAGTCTACCGTCACAAAACTGAGCCAACATCACGAGACTATAGTTTTCGAGAAGCCAGGAAGTGATTTGTGCGCTGCTTTCCTCACCAACAACCACACCTTGACACCAGCAACCATAAAATTCAGAGGTACTGACTACTATATGCCACCACGTTCCATTAGCATACTCCCTGACTGCAAGACTGTTGTCTTCAACACTCAATTTATTGCTTCACAACATAATTCAAGGAACTTCAAGAGGTCAATGGCAGCAAACAATCATAAGTGGGAGGTGTATTCTGAGAACATTCCTACCACCAAGCAAATTCCAACCAATGAAAAGATTCCTACAGAGCTTTACAGTTTGCTTAAAGACACCAGCGACTATGCATGGTACACCACCAGCGTGGAACTGGGTCCAGAAGACTTGCCAAAGAAGAATGATATATCCCCCGTTCTCCGTATTATGAGTCTTGGCCATTCATTGGTTGCCTTTGTAAATGGAGAATTCATTGGATCAAATCACGGTTCCCATGAAGAGAAAAGTTTTGAATTCCAGAAACCTGTAACCTTGAAGGTTGGAGTTAACCAAATAGCTATCTTGGCTTGCACTGTGGGACTCCCCGACAGTGGAGCATACATGGAGCACAGGTTCGCTGGACCAAAGTCTATTTTCATCCTTGGTCTCAACTCTGGAAAAATTGATCTCGCTTCTAATGGTTGGGGTCATAAGGTTGGTATCAAAGGTGAGGAGCTTGGCATTTTCACTGAAGAGGGGTCAAAGAAAGTACAATGGAAAGAAGCCAAGGGATCTGGACCAGCTCTCTCCTGGTACAAGACAAATTTTGAAACCCCGGAGGGAACGGATCCTGTTGCCATCAGAATGACTGGTATGGGGAAGGGAATGATTTGGATCAATGGCAAAAGCATTGGTCGTCACTGGATGAGTTACCTCTCTCCTCTTGGAATGCCTACTCAGTCAGAGTACCACATCCCCAGAGCTTTCTTCAATCCAAAAGACAACTTGATTGTTGTGTTTGAGGAAGAGATAGCAAATCCAGAAAAGGTTGAGATCCTAACTGTAGACAGAGATACAATATGCAGTTTCATCACAGAGAATCACCCCCCCAATGTGAAGTCATGGGCAGTTAAGAGCGAGAAGTTCCAGGCTCTTTCGAATAATCTGGTGCCAACAGCTACACTCAAATGTCCAAACCGCAGAACCATTAAGGCTGTGGAGTTTGCAAGCTTTGGTGATCCTGCTGGTGTATGTGGAGCCTATACTTTAGGCAAATGTAATGCACCTTCCACCAAGCAGATTGTTGAGAAGCATTGCCTTGGAAAACAATCCTGTAATGTTCCAATTGACAAGGACGCCTTCACTAAGGGCCAAGATGCTTGCCGAAATATGGTGAAGGCACTTGCAATCCAAGTGAAGTGTGAAGCCTAG

>Glyma12g03650.2   sequence type=CDS   gene model=Glyma12g03650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCTCGTTCAAAAGAAAGGAATGTATGTAACCCTCAGGGTTGGGCCTTTCATCCAAGCTGAATGGAACCACGGAGGACTTCCATATTGGCTGAGAGAGATCCCTGATATCATATTCCGCTCTAACAATGAACCCTTTAAGAAGCACATGAAAGAATATGTATCAACTGTTGTAAAAACGTTGAAAGAGGCGAAGCTCTTTGGTCCCCAAGGAGGCCCCATCATCTTGGCACAGATTGAGAATGAGTACAACCATATCCAACGTGCTTTCAGAGAGGAAGGAGATAATTATGTCCAATGGGCTGCGAAAATGGCAGTGTCGCTGGATGTTGGAGTTCCATGGATCATGTGCAAGCAGAGAGATGCTCCTGATCCAGTGATTAATGCTTGCAATGGAAGGCACTGTGGTGATACCTTTGCAGGCCCCAACAAACCTTACAAGCCTTCTCTATGGACTGAAAACTGGACGGTTCAGTATAGAGTGTTTGGAGATCCACCATCCCGAAGATCAGCAGAAGACATTGCCTTTTCAGTTGCTCGCTTCTTCTCTAAGAATGGATCTTTGGTGAACTATTATATGTACCATGGTGGAACAAATTTTGGTAGAACAAGCTCTGCCTTCACTACAACCCAATATTATGATGAAGCCCCTCTTGATGAGTACGGTATGCAGAGAGAACCAAAATGGAGTCACTTGAGGGATGTGCACAAGGCATTGAGCCTATGCAAGAAGGCCTTGTTCAATGGTGAGTCTACCGTCACAAAACTGAGCCAACATCACGAGACTATAGTTTTCGAGAAGCCAGGAAGTGATTTGTGCGCTGCTTTCCTCACCAACAACCACACCTTGACACCAGCAACCATAAAATTCAGAGGTACTGACTACTATATGCCACCACGTTCCATTAGCATACTCCCTGACTGCAAGACTGTTGTCTTCAACACTCAATTTATTGCTTCACAACATAATTCAAGGAACTTCAAGAGGTCAATGGCAGCAAACAATCATAAGTGGGAGGTGTATTCTGAGAACATTCCTACCACCAAGCAAATTCCAACCAATGAAAAGATTCCTACAGAGCTTTACAGTTTGCTTAAAGACACCAGCGACTATGCATGGTACACCACCAGCGTGGAACTGGGTCCAGAAGACTTGCCAAAGAAGAATGATATATCCCCCGTTCTCCGTATTATGAGTCTTGGCCATTCATTGGTTGCCTTTGTAAATGGAGAATTCATTGGATCAAATCACGGTTCCCATGAAGAGAAAAGTTTTGAATTCCAGAAACCTGTAACCTTGAAGGTTGGAGTTAACCAAATAGCTATCTTGGCTTGCACTGTGGGACTCCCCGACAGTGGAGCATACATGGAGCACAGGTTCGCTGGACCAAAGTCTATTTTCATCCTTGGTCTCAACTCTGGAAAAATTGATCTCGCTTCTAATGGTTGGGGTCATAAGGTTGGTATCAAAGGTGAGGAGCTTGGCATTTTCACTGAAGAGGGGTCAAAGAAAGTACAATGGAAAGAAGCCAAGGGATCTGGACCAGCTCTCTCCTGGTACAAGACAAATTTTGAAACCCCGGAGGGAACGGATCCTGTTGCCATCAGAATGACTGGTATGGGGAAGGGAATGATTTGGATCAATGGCAAAAGCATTGGTCGTCACTGGATGAGTTACCTCTCTCCTCTTGGAATGCCTACTCAGTCAGAGTACCACATCCCCAGAGCTTTCTTCAATCCAAAAGACAACTTGATTGTTGTGTTTGAGGAAGAGATAGCAAATCCAGAAAAGGTTGAGATCCTAACTGTAGACAGAGATACAATATGCAGTTTCATCACAGAGAATCACCCCCCCAATGTGAAGTCATGGGCAGTTAAGAGCGAGAAGTTCCAGGCTCTTTCGAATAATCTGGTGCCAACAGCTACACTCAAATGTCCAAACCGCAGAACCATTAAGGCTGTGGAGTTTGCAAGCTTTGGTGATCCTGCTGGTGTATGTGGAGCCTATACTTTAGGCAAATGTAATGCACCTTCCACCAAGCAGATTGTTGAGAAGCATTGCCTTGGAAAACAATCCTGTAATGTTCCAATTGACAAGGACGCCTTCACTAAGGGCCAAGATGCTTGCCGAAATATGGTGAAGGCACTTGCAATCCAAGTGAAGTGTGAAGCCTAG

Predicted protein sequences of Glyma12g03650

Limit To All Plant Sequences

>Glyma12g03650.1   sequence type=predicted peptide   gene model=Glyma12g03650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLVTNGIAETVSEQLLHLIRRRVTSIKPHFTSFSFSPFCTYNLNMSILKVLLITIIVSLVISASSAHDEDNKKMTSESDDNDKDKKKTVTYDGRSLIINGRRELLFSGSIHYPRSTPEFSIEPQYDYIKFMKLVQKKGMYVTLRVGPFIQAEWNHGGLPYWLREIPDIIFRSNNEPFKKHMKEYVSTVVKTLKEAKLFGPQGGPIILAQIENEYNHIQRAFREEGDNYVQWAAKMAVSLDVGVPWIMCKQRDAPDPVINACNGRHCGDTFAGPNKPYKPSLWTENWTVQYRVFGDPPSRRSAEDIAFSVARFFSKNGSLVNYYMYHGGTNFGRTSSAFTTTQYYDEAPLDEYGMQREPKWSHLRDVHKALSLCKKALFNGESTVTKLSQHHETIVFEKPGSDLCAAFLTNNHTLTPATIKFRGTDYYMPPRSISILPDCKTVVFNTQFIASQHNSRNFKRSMAANNHKWEVYSENIPTTKQIPTNEKIPTELYSLLKDTSDYAWYTTSVELGPEDLPKKNDISPVLRIMSLGHSLVAFVNGEFIGSNHGSHEEKSFEFQKPVTLKVGVNQIAILACTVGLPDSGAYMEHRFAGPKSIFILGLNSGKIDLASNGWGHKVGIKGEELGIFTEEGSKKVQWKEAKGSGPALSWYKTNFETPEGTDPVAIRMTGMGKGMIWINGKSIGRHWMSYLSPLGMPTQSEYHIPRAFFNPKDNLIVVFEEEIANPEKVEILTVDRDTICSFITENHPPNVKSWAVKSEKFQALSNNLVPTATLKCPNRRTIKAVEFASFGDPAGVCGAYTLGKCNAPSTKQIVEKHCLGKQSCNVPIDKDAFTKGQDACRNMVKALAIQVKCEA*

>Glyma12g03650.2   sequence type=predicted peptide   gene model=Glyma12g03650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLVQKKGMYVTLRVGPFIQAEWNHGGLPYWLREIPDIIFRSNNEPFKKHMKEYVSTVVKTLKEAKLFGPQGGPIILAQIENEYNHIQRAFREEGDNYVQWAAKMAVSLDVGVPWIMCKQRDAPDPVINACNGRHCGDTFAGPNKPYKPSLWTENWTVQYRVFGDPPSRRSAEDIAFSVARFFSKNGSLVNYYMYHGGTNFGRTSSAFTTTQYYDEAPLDEYGMQREPKWSHLRDVHKALSLCKKALFNGESTVTKLSQHHETIVFEKPGSDLCAAFLTNNHTLTPATIKFRGTDYYMPPRSISILPDCKTVVFNTQFIASQHNSRNFKRSMAANNHKWEVYSENIPTTKQIPTNEKIPTELYSLLKDTSDYAWYTTSVELGPEDLPKKNDISPVLRIMSLGHSLVAFVNGEFIGSNHGSHEEKSFEFQKPVTLKVGVNQIAILACTVGLPDSGAYMEHRFAGPKSIFILGLNSGKIDLASNGWGHKVGIKGEELGIFTEEGSKKVQWKEAKGSGPALSWYKTNFETPEGTDPVAIRMTGMGKGMIWINGKSIGRHWMSYLSPLGMPTQSEYHIPRAFFNPKDNLIVVFEEEIANPEKVEILTVDRDTICSFITENHPPNVKSWAVKSEKFQALSNNLVPTATLKCPNRRTIKAVEFASFGDPAGVCGAYTLGKCNAPSTKQIVEKHCLGKQSCNVPIDKDAFTKGQDACRNMVKALAIQVKCEA*

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